Gene : Brara.I01801 B. rapa FPsc v1.3
Defline:  (1 of 2) PTHR33428:SF1 - CHLOROPHYLLASE-2, CHLOROPLASTIC Genomic Order:  1801
Name:  ? Brara.I01801 Secondary Identifier:  ? PAC:30645772
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-5098 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-6927 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.I01801 0.5kb upstream 0.5kb upstream 2306 true A09: 12570594-12572899 Brassica rapa FPsc
Brara.I01801 0.5kb upstream 0.5kb upstream 500 false A09: 12570594-12571093 Brassica rapa FPsc
Brara.I01801 0.5kb downstream 0.5kb downstream 2306 true A09: 12571094-12573399 Brassica rapa FPsc
Brara.I01801 0.5kb downstream 0.5kb downstream 500 false A09: 12572900-12573399 Brassica rapa FPsc
Brara.I01801 1.0kb upstream 1.0kb upstream 2806 true A09: 12570094-12572899 Brassica rapa FPsc
Brara.I01801 1.0kb upstream 1.0kb upstream 1000 false A09: 12570094-12571093 Brassica rapa FPsc
Brara.I01801 1.0kb downstream 1.0kb downstream 2806 true A09: 12571094-12573899 Brassica rapa FPsc
Brara.I01801 1.0kb downstream 1.0kb downstream 1000 false A09: 12572900-12573899 Brassica rapa FPsc
Brara.I01801 2.0kb upstream 2.0kb upstream 3806 true A09: 12569094-12572899 Brassica rapa FPsc
Brara.I01801 2.0kb upstream 2.0kb upstream 2000 false A09: 12569094-12571093 Brassica rapa FPsc
Brara.I01801 2.0kb downstream 2.0kb downstream 3806 true A09: 12571094-12574899 Brassica rapa FPsc
Brara.I01801 2.0kb downstream 2.0kb downstream 2000 false A09: 12572900-12574899 Brassica rapa FPsc
Brara.I01801 5.0kb upstream 5.0kb upstream 6806 true A09: 12566094-12572899 Brassica rapa FPsc
Brara.I01801 5.0kb upstream 5.0kb upstream 5000 false A09: 12566094-12571093 Brassica rapa FPsc
Brara.I01801 5.0kb downstream 5.0kb downstream 6806 true A09: 12571094-12577899 Brassica rapa FPsc
Brara.I01801 5.0kb downstream 5.0kb downstream 5000 false A09: 12572900-12577899 Brassica rapa FPsc
Brara.I01801 10.0kb upstream 10.0kb upstream 11806 true A09: 12561094-12572899 Brassica rapa FPsc
Brara.I01801 10.0kb upstream 10.0kb upstream 10000 false A09: 12561094-12571093 Brassica rapa FPsc
Brara.I01801 10.0kb downstream 10.0kb downstream 11806 true A09: 12571094-12582899 Brassica rapa FPsc
Brara.I01801 10.0kb downstream 10.0kb downstream 10000 false A09: 12572900-12582899 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122354483 5261 Brassicaceae Singleton cluster - no MSA
123792869 5264 Brassicales-Malvales Singleton cluster - no MSA
124290731 5266 SBM Singleton cluster - no MSA
124250638 5268 Malvidae View MSA
124065690 5270 Rosid View MSA
123737382 5271 Pentapetalae View MSA
122788570 5272 Eudicot View MSA
122043389 5273 Angiosperm View MSA
121344751 5274 Embryophyte View MSA
123428003 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier