Gene : Brara.I03608 B. rapa FPsc v1.3
Defline:  (1 of 2) PTHR20852:SF16 - TYPE-1 GLUTAMINE SYNTHETASE 1 Genomic Order:  3608
Name:  ? Brara.I03608 Secondary Identifier:  ? PAC:30641971
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Sequence Feature Displayer

Ontology Annotation Displayer

6 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc GLNSYN-PWY Brassica rapa FPsc pathologic  
BrapaFPsc PWY-3282 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-381 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-6549 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-6963 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-6964 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.I03608 0.5kb upstream 0.5kb upstream 5226 true A09: 33682513-33687738 Brassica rapa FPsc
Brara.I03608 0.5kb upstream 0.5kb upstream 500 false A09: 33682513-33683012 Brassica rapa FPsc
Brara.I03608 0.5kb downstream 0.5kb downstream 5226 true A09: 33683013-33688238 Brassica rapa FPsc
Brara.I03608 0.5kb downstream 0.5kb downstream 500 false A09: 33687739-33688238 Brassica rapa FPsc
Brara.I03608 1.0kb upstream 1.0kb upstream 5726 true A09: 33682013-33687738 Brassica rapa FPsc
Brara.I03608 1.0kb upstream 1.0kb upstream 1000 false A09: 33682013-33683012 Brassica rapa FPsc
Brara.I03608 1.0kb downstream 1.0kb downstream 5726 true A09: 33683013-33688738 Brassica rapa FPsc
Brara.I03608 1.0kb downstream 1.0kb downstream 1000 false A09: 33687739-33688738 Brassica rapa FPsc
Brara.I03608 2.0kb upstream 2.0kb upstream 6726 true A09: 33681013-33687738 Brassica rapa FPsc
Brara.I03608 2.0kb upstream 2.0kb upstream 2000 false A09: 33681013-33683012 Brassica rapa FPsc
Brara.I03608 2.0kb downstream 2.0kb downstream 6726 true A09: 33683013-33689738 Brassica rapa FPsc
Brara.I03608 2.0kb downstream 2.0kb downstream 2000 false A09: 33687739-33689738 Brassica rapa FPsc
Brara.I03608 5.0kb upstream 5.0kb upstream 9726 true A09: 33678013-33687738 Brassica rapa FPsc
Brara.I03608 5.0kb upstream 5.0kb upstream 5000 false A09: 33678013-33683012 Brassica rapa FPsc
Brara.I03608 5.0kb downstream 5.0kb downstream 9726 true A09: 33683013-33692738 Brassica rapa FPsc
Brara.I03608 5.0kb downstream 5.0kb downstream 5000 false A09: 33687739-33692738 Brassica rapa FPsc
Brara.I03608 10.0kb upstream 10.0kb upstream 14726 true A09: 33673013-33687738 Brassica rapa FPsc
Brara.I03608 10.0kb upstream 10.0kb upstream 10000 false A09: 33673013-33683012 Brassica rapa FPsc
Brara.I03608 10.0kb downstream 10.0kb downstream 14726 true A09: 33683013-33697738 Brassica rapa FPsc
Brara.I03608 10.0kb downstream 10.0kb downstream 10000 false A09: 33687739-33697738 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370921 5261 Brassicaceae View MSA
123830288 5264 Brassicales-Malvales View MSA
124344097 5266 SBM View MSA
124252817 5268 Malvidae View MSA
124062784 5270 Rosid View MSA
123749163 5271 Pentapetalae View MSA
122791802 5272 Eudicot View MSA
122046045 5273 Angiosperm View MSA
121348529 5274 Embryophyte View MSA
123428524 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier