Gene : Brara.I03353 B. rapa FPsc v1.3
Defline:  (1 of 3) PTHR11680:SF7 - SERINE HYDROXYMETHYLTRANSFERASE 6-RELATED Genomic Order:  3353
Name:  ? Brara.I03353 Secondary Identifier:  ? PAC:30645687
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc GLYSYN-PWY Brassica rapa FPsc pathologic  
BrapaFPsc PWY-2161 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-3841 Brassica rapa FPsc pathologic  
BrapaFPsc SER-GLYSYN-PWY Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.I03353 0.5kb upstream 0.5kb upstream 3408 true A09: 31876499-31879906 Brassica rapa FPsc
Brara.I03353 0.5kb upstream 0.5kb upstream 500 false A09: 31876499-31876998 Brassica rapa FPsc
Brara.I03353 0.5kb downstream 0.5kb downstream 3408 true A09: 31876999-31880406 Brassica rapa FPsc
Brara.I03353 0.5kb downstream 0.5kb downstream 500 false A09: 31879907-31880406 Brassica rapa FPsc
Brara.I03353 1.0kb upstream 1.0kb upstream 3908 true A09: 31875999-31879906 Brassica rapa FPsc
Brara.I03353 1.0kb upstream 1.0kb upstream 1000 false A09: 31875999-31876998 Brassica rapa FPsc
Brara.I03353 1.0kb downstream 1.0kb downstream 3908 true A09: 31876999-31880906 Brassica rapa FPsc
Brara.I03353 1.0kb downstream 1.0kb downstream 1000 false A09: 31879907-31880906 Brassica rapa FPsc
Brara.I03353 2.0kb upstream 2.0kb upstream 4908 true A09: 31874999-31879906 Brassica rapa FPsc
Brara.I03353 2.0kb upstream 2.0kb upstream 2000 false A09: 31874999-31876998 Brassica rapa FPsc
Brara.I03353 2.0kb downstream 2.0kb downstream 4908 true A09: 31876999-31881906 Brassica rapa FPsc
Brara.I03353 2.0kb downstream 2.0kb downstream 2000 false A09: 31879907-31881906 Brassica rapa FPsc
Brara.I03353 5.0kb upstream 5.0kb upstream 7908 true A09: 31871999-31879906 Brassica rapa FPsc
Brara.I03353 5.0kb upstream 5.0kb upstream 5000 false A09: 31871999-31876998 Brassica rapa FPsc
Brara.I03353 5.0kb downstream 5.0kb downstream 7908 true A09: 31876999-31884906 Brassica rapa FPsc
Brara.I03353 5.0kb downstream 5.0kb downstream 5000 false A09: 31879907-31884906 Brassica rapa FPsc
Brara.I03353 10.0kb upstream 10.0kb upstream 12908 true A09: 31866999-31879906 Brassica rapa FPsc
Brara.I03353 10.0kb upstream 10.0kb upstream 10000 false A09: 31866999-31876998 Brassica rapa FPsc
Brara.I03353 10.0kb downstream 10.0kb downstream 12908 true A09: 31876999-31889906 Brassica rapa FPsc
Brara.I03353 10.0kb downstream 10.0kb downstream 10000 false A09: 31879907-31889906 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371827 5261 Brassicaceae View MSA
123838669 5264 Brassicales-Malvales View MSA
124343045 5266 SBM View MSA
124253011 5268 Malvidae View MSA
124069560 5270 Rosid View MSA
123741866 5271 Pentapetalae View MSA
122787051 5272 Eudicot View MSA
122046261 5273 Angiosperm View MSA
121345900 5274 Embryophyte View MSA
123426459 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier