Gene : Brara.E01425 B. rapa FPsc v1.3
Defline:  (1 of 3) PF02900 - Catalytic LigB subunit of aromatic ring-opening dioxygenase (LigB) Genomic Order:  1425
Name:  ? Brara.E01425 Secondary Identifier:  ? PAC:30625735
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.E01425 0.5kb upstream 0.5kb upstream 1889 true A05: 9143799-9145687 Brassica rapa FPsc
Brara.E01425 0.5kb upstream 0.5kb upstream 500 false A05: 9143799-9144298 Brassica rapa FPsc
Brara.E01425 0.5kb downstream 0.5kb downstream 1889 true A05: 9144299-9146187 Brassica rapa FPsc
Brara.E01425 0.5kb downstream 0.5kb downstream 500 false A05: 9145688-9146187 Brassica rapa FPsc
Brara.E01425 1.0kb upstream 1.0kb upstream 2389 true A05: 9143299-9145687 Brassica rapa FPsc
Brara.E01425 1.0kb upstream 1.0kb upstream 1000 false A05: 9143299-9144298 Brassica rapa FPsc
Brara.E01425 1.0kb downstream 1.0kb downstream 2389 true A05: 9144299-9146687 Brassica rapa FPsc
Brara.E01425 1.0kb downstream 1.0kb downstream 1000 false A05: 9145688-9146687 Brassica rapa FPsc
Brara.E01425 2.0kb upstream 2.0kb upstream 3389 true A05: 9142299-9145687 Brassica rapa FPsc
Brara.E01425 2.0kb upstream 2.0kb upstream 2000 false A05: 9142299-9144298 Brassica rapa FPsc
Brara.E01425 2.0kb downstream 2.0kb downstream 3389 true A05: 9144299-9147687 Brassica rapa FPsc
Brara.E01425 2.0kb downstream 2.0kb downstream 2000 false A05: 9145688-9147687 Brassica rapa FPsc
Brara.E01425 5.0kb upstream 5.0kb upstream 6389 true A05: 9139299-9145687 Brassica rapa FPsc
Brara.E01425 5.0kb upstream 5.0kb upstream 5000 false A05: 9139299-9144298 Brassica rapa FPsc
Brara.E01425 5.0kb downstream 5.0kb downstream 6389 true A05: 9144299-9150687 Brassica rapa FPsc
Brara.E01425 5.0kb downstream 5.0kb downstream 5000 false A05: 9145688-9150687 Brassica rapa FPsc
Brara.E01425 10.0kb upstream 10.0kb upstream 11389 true A05: 9134299-9145687 Brassica rapa FPsc
Brara.E01425 10.0kb upstream 10.0kb upstream 10000 false A05: 9134299-9144298 Brassica rapa FPsc
Brara.E01425 10.0kb downstream 10.0kb downstream 11389 true A05: 9144299-9155687 Brassica rapa FPsc
Brara.E01425 10.0kb downstream 10.0kb downstream 10000 false A05: 9145688-9155687 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373757 5261 Brassicaceae View MSA
123830535 5264 Brassicales-Malvales View MSA
124350722 5266 SBM View MSA
124250769 5268 Malvidae View MSA
124061164 5270 Rosid View MSA
123748112 5271 Pentapetalae View MSA
122788148 5272 Eudicot View MSA
122046323 5273 Angiosperm View MSA
121350065 5274 Embryophyte View MSA
123426386 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier