Gene : Brara.I03970 B. rapa FPsc v1.3
Defline:  (1 of 5) PTHR31375:SF3 - POLYGALACTURONASE ADPG1-RELATED Genomic Order:  3970
Name:  ? Brara.I03970 Secondary Identifier:  ? PAC:30646257
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-1081 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.I03970 0.5kb upstream 0.5kb upstream 2862 true A09: 36052816-36055677 Brassica rapa FPsc
Brara.I03970 0.5kb upstream 0.5kb upstream 500 false A09: 36055178-36055677 Brassica rapa FPsc
Brara.I03970 0.5kb downstream 0.5kb downstream 2862 true A09: 36052316-36055177 Brassica rapa FPsc
Brara.I03970 0.5kb downstream 0.5kb downstream 500 false A09: 36052316-36052815 Brassica rapa FPsc
Brara.I03970 1.0kb upstream 1.0kb upstream 3362 true A09: 36052816-36056177 Brassica rapa FPsc
Brara.I03970 1.0kb upstream 1.0kb upstream 1000 false A09: 36055178-36056177 Brassica rapa FPsc
Brara.I03970 1.0kb downstream 1.0kb downstream 3362 true A09: 36051816-36055177 Brassica rapa FPsc
Brara.I03970 1.0kb downstream 1.0kb downstream 1000 false A09: 36051816-36052815 Brassica rapa FPsc
Brara.I03970 2.0kb upstream 2.0kb upstream 4362 true A09: 36052816-36057177 Brassica rapa FPsc
Brara.I03970 2.0kb upstream 2.0kb upstream 2000 false A09: 36055178-36057177 Brassica rapa FPsc
Brara.I03970 2.0kb downstream 2.0kb downstream 4362 true A09: 36050816-36055177 Brassica rapa FPsc
Brara.I03970 2.0kb downstream 2.0kb downstream 2000 false A09: 36050816-36052815 Brassica rapa FPsc
Brara.I03970 5.0kb upstream 5.0kb upstream 7362 true A09: 36052816-36060177 Brassica rapa FPsc
Brara.I03970 5.0kb upstream 5.0kb upstream 5000 false A09: 36055178-36060177 Brassica rapa FPsc
Brara.I03970 5.0kb downstream 5.0kb downstream 7362 true A09: 36047816-36055177 Brassica rapa FPsc
Brara.I03970 5.0kb downstream 5.0kb downstream 5000 false A09: 36047816-36052815 Brassica rapa FPsc
Brara.I03970 10.0kb upstream 10.0kb upstream 12362 true A09: 36052816-36065177 Brassica rapa FPsc
Brara.I03970 10.0kb upstream 10.0kb upstream 10000 false A09: 36055178-36065177 Brassica rapa FPsc
Brara.I03970 10.0kb downstream 10.0kb downstream 12362 true A09: 36042816-36055177 Brassica rapa FPsc
Brara.I03970 10.0kb downstream 10.0kb downstream 10000 false A09: 36042816-36052815 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122354606 5261 Brassicaceae Singleton cluster - no MSA
123792977 5264 Brassicales-Malvales Singleton cluster - no MSA
124290835 5266 SBM Singleton cluster - no MSA
124251426 5268 Malvidae View MSA
124073768 5270 Rosid View MSA
123750458 5271 Pentapetalae View MSA
122794874 5272 Eudicot View MSA
122047278 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier