Gene : Brara.B03407 B. rapa FPsc v1.3
Defline:  (1 of 4) PTHR13914 - PROLINE OXIDASE Genomic Order:  3407
Name:  ? Brara.B03407 Secondary Identifier:  ? PAC:30608850
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc CITRULBIO-PWY Brassica rapa FPsc pathologic  
BrapaFPsc PROUT-PWY Brassica rapa FPsc pathologic  
BrapaFPsc PWY-6922 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.B03407 0.5kb upstream 0.5kb upstream 3177 true A02: 28521348-28524524 Brassica rapa FPsc
Brara.B03407 0.5kb upstream 0.5kb upstream 500 false A02: 28524025-28524524 Brassica rapa FPsc
Brara.B03407 0.5kb downstream 0.5kb downstream 3177 true A02: 28520848-28524024 Brassica rapa FPsc
Brara.B03407 0.5kb downstream 0.5kb downstream 500 false A02: 28520848-28521347 Brassica rapa FPsc
Brara.B03407 1.0kb upstream 1.0kb upstream 3677 true A02: 28521348-28525024 Brassica rapa FPsc
Brara.B03407 1.0kb upstream 1.0kb upstream 1000 false A02: 28524025-28525024 Brassica rapa FPsc
Brara.B03407 1.0kb downstream 1.0kb downstream 3677 true A02: 28520348-28524024 Brassica rapa FPsc
Brara.B03407 1.0kb downstream 1.0kb downstream 1000 false A02: 28520348-28521347 Brassica rapa FPsc
Brara.B03407 2.0kb upstream 2.0kb upstream 4677 true A02: 28521348-28526024 Brassica rapa FPsc
Brara.B03407 2.0kb upstream 2.0kb upstream 2000 false A02: 28524025-28526024 Brassica rapa FPsc
Brara.B03407 2.0kb downstream 2.0kb downstream 4677 true A02: 28519348-28524024 Brassica rapa FPsc
Brara.B03407 2.0kb downstream 2.0kb downstream 2000 false A02: 28519348-28521347 Brassica rapa FPsc
Brara.B03407 5.0kb upstream 5.0kb upstream 7677 true A02: 28521348-28529024 Brassica rapa FPsc
Brara.B03407 5.0kb upstream 5.0kb upstream 5000 false A02: 28524025-28529024 Brassica rapa FPsc
Brara.B03407 5.0kb downstream 5.0kb downstream 7677 true A02: 28516348-28524024 Brassica rapa FPsc
Brara.B03407 5.0kb downstream 5.0kb downstream 5000 false A02: 28516348-28521347 Brassica rapa FPsc
Brara.B03407 10.0kb upstream 10.0kb upstream 12677 true A02: 28521348-28534024 Brassica rapa FPsc
Brara.B03407 10.0kb upstream 10.0kb upstream 10000 false A02: 28524025-28534024 Brassica rapa FPsc
Brara.B03407 10.0kb downstream 10.0kb downstream 12677 true A02: 28511348-28524024 Brassica rapa FPsc
Brara.B03407 10.0kb downstream 10.0kb downstream 10000 false A02: 28511348-28521347 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373825 5261 Brassicaceae View MSA
123839513 5264 Brassicales-Malvales View MSA
124339055 5266 SBM View MSA
124243556 5268 Malvidae View MSA
124068346 5270 Rosid View MSA
123743697 5271 Pentapetalae View MSA
122792525 5272 Eudicot View MSA
122047709 5273 Angiosperm View MSA
121345691 5274 Embryophyte View MSA
123427745 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier