Gene : Brara.I02817 B. rapa FPsc v1.3
Defline:  (1 of 2) PTHR34195:SF2 - PHOTOSYSTEM I REACTION CENTER SUBUNIT PSAK, CHLOROPLASTIC Genomic Order:  2817
Name:  ? Brara.I02817 Secondary Identifier:  ? PAC:30645268
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PHOTOALL-PWY Brassica rapa FPsc pathologic  
BrapaFPsc PWY-101 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.I02817 0.5kb upstream 0.5kb upstream 1509 true A09: 27115762-27117270 Brassica rapa FPsc
Brara.I02817 0.5kb upstream 0.5kb upstream 500 false A09: 27116771-27117270 Brassica rapa FPsc
Brara.I02817 0.5kb downstream 0.5kb downstream 1509 true A09: 27115262-27116770 Brassica rapa FPsc
Brara.I02817 0.5kb downstream 0.5kb downstream 500 false A09: 27115262-27115761 Brassica rapa FPsc
Brara.I02817 1.0kb upstream 1.0kb upstream 2009 true A09: 27115762-27117770 Brassica rapa FPsc
Brara.I02817 1.0kb upstream 1.0kb upstream 1000 false A09: 27116771-27117770 Brassica rapa FPsc
Brara.I02817 1.0kb downstream 1.0kb downstream 2009 true A09: 27114762-27116770 Brassica rapa FPsc
Brara.I02817 1.0kb downstream 1.0kb downstream 1000 false A09: 27114762-27115761 Brassica rapa FPsc
Brara.I02817 2.0kb upstream 2.0kb upstream 3009 true A09: 27115762-27118770 Brassica rapa FPsc
Brara.I02817 2.0kb upstream 2.0kb upstream 2000 false A09: 27116771-27118770 Brassica rapa FPsc
Brara.I02817 2.0kb downstream 2.0kb downstream 3009 true A09: 27113762-27116770 Brassica rapa FPsc
Brara.I02817 2.0kb downstream 2.0kb downstream 2000 false A09: 27113762-27115761 Brassica rapa FPsc
Brara.I02817 5.0kb upstream 5.0kb upstream 6009 true A09: 27115762-27121770 Brassica rapa FPsc
Brara.I02817 5.0kb upstream 5.0kb upstream 5000 false A09: 27116771-27121770 Brassica rapa FPsc
Brara.I02817 5.0kb downstream 5.0kb downstream 6009 true A09: 27110762-27116770 Brassica rapa FPsc
Brara.I02817 5.0kb downstream 5.0kb downstream 5000 false A09: 27110762-27115761 Brassica rapa FPsc
Brara.I02817 10.0kb upstream 10.0kb upstream 11009 true A09: 27115762-27126770 Brassica rapa FPsc
Brara.I02817 10.0kb upstream 10.0kb upstream 10000 false A09: 27116771-27126770 Brassica rapa FPsc
Brara.I02817 10.0kb downstream 10.0kb downstream 11009 true A09: 27105762-27116770 Brassica rapa FPsc
Brara.I02817 10.0kb downstream 10.0kb downstream 10000 false A09: 27105762-27115761 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378578 5261 Brassicaceae View MSA
123833502 5264 Brassicales-Malvales View MSA
124342197 5266 SBM View MSA
124242965 5268 Malvidae View MSA
124064022 5270 Rosid View MSA
123739111 5271 Pentapetalae View MSA
122786435 5272 Eudicot View MSA
122044551 5273 Angiosperm View MSA
121347312 5274 Embryophyte View MSA
123425033 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier