Gene : Brara.C00127 B. rapa FPsc v1.3
Defline:  (1 of 3) PTHR21654:SF5 - TRIHELIX TRANSCRIPTION FACTOR PTL Genomic Order:  127
Name:  ? Brara.C00127 Secondary Identifier:  ? PAC:30619502
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.C00127 0.5kb upstream 0.5kb upstream 4137 true A03: 521108-525244 Brassica rapa FPsc
Brara.C00127 0.5kb upstream 0.5kb upstream 500 false A03: 521108-521607 Brassica rapa FPsc
Brara.C00127 0.5kb downstream 0.5kb downstream 4137 true A03: 521608-525744 Brassica rapa FPsc
Brara.C00127 0.5kb downstream 0.5kb downstream 500 false A03: 525245-525744 Brassica rapa FPsc
Brara.C00127 1.0kb upstream 1.0kb upstream 4637 true A03: 520608-525244 Brassica rapa FPsc
Brara.C00127 1.0kb upstream 1.0kb upstream 1000 false A03: 520608-521607 Brassica rapa FPsc
Brara.C00127 1.0kb downstream 1.0kb downstream 4637 true A03: 521608-526244 Brassica rapa FPsc
Brara.C00127 1.0kb downstream 1.0kb downstream 1000 false A03: 525245-526244 Brassica rapa FPsc
Brara.C00127 2.0kb upstream 2.0kb upstream 5637 true A03: 519608-525244 Brassica rapa FPsc
Brara.C00127 2.0kb upstream 2.0kb upstream 2000 false A03: 519608-521607 Brassica rapa FPsc
Brara.C00127 2.0kb downstream 2.0kb downstream 5637 true A03: 521608-527244 Brassica rapa FPsc
Brara.C00127 2.0kb downstream 2.0kb downstream 2000 false A03: 525245-527244 Brassica rapa FPsc
Brara.C00127 5.0kb upstream 5.0kb upstream 8637 true A03: 516608-525244 Brassica rapa FPsc
Brara.C00127 5.0kb upstream 5.0kb upstream 5000 false A03: 516608-521607 Brassica rapa FPsc
Brara.C00127 5.0kb downstream 5.0kb downstream 8637 true A03: 521608-530244 Brassica rapa FPsc
Brara.C00127 5.0kb downstream 5.0kb downstream 5000 false A03: 525245-530244 Brassica rapa FPsc
Brara.C00127 10.0kb upstream 10.0kb upstream 13637 true A03: 511608-525244 Brassica rapa FPsc
Brara.C00127 10.0kb upstream 10.0kb upstream 10000 false A03: 511608-521607 Brassica rapa FPsc
Brara.C00127 10.0kb downstream 10.0kb downstream 13637 true A03: 521608-535244 Brassica rapa FPsc
Brara.C00127 10.0kb downstream 10.0kb downstream 10000 false A03: 525245-535244 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122348076 5261 Brassicaceae Singleton cluster - no MSA
123787485 5264 Brassicales-Malvales Singleton cluster - no MSA
124350171 5266 SBM View MSA
124245881 5268 Malvidae View MSA
124071653 5270 Rosid View MSA
123751862 5271 Pentapetalae View MSA
122786216 5272 Eudicot View MSA
122049868 5273 Angiosperm View MSA
121349901 5274 Embryophyte View MSA
123381491 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier