Gene : Brara.I04289 B. rapa FPsc v1.3
Defline:  (1 of 1) PTHR12725//PTHR12725:SF73 - HALOACID DEHALOGENASE-LIKE HYDROLASE Genomic Order:  4289
Name:  ? Brara.I04289 Secondary Identifier:  ? PAC:30641063
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-7204 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.I04289 0.5kb upstream 0.5kb upstream 1907 true A09: 37878587-37880493 Brassica rapa FPsc
Brara.I04289 0.5kb upstream 0.5kb upstream 500 false A09: 37879994-37880493 Brassica rapa FPsc
Brara.I04289 0.5kb downstream 0.5kb downstream 1907 true A09: 37878087-37879993 Brassica rapa FPsc
Brara.I04289 0.5kb downstream 0.5kb downstream 500 false A09: 37878087-37878586 Brassica rapa FPsc
Brara.I04289 1.0kb upstream 1.0kb upstream 2407 true A09: 37878587-37880993 Brassica rapa FPsc
Brara.I04289 1.0kb upstream 1.0kb upstream 1000 false A09: 37879994-37880993 Brassica rapa FPsc
Brara.I04289 1.0kb downstream 1.0kb downstream 2407 true A09: 37877587-37879993 Brassica rapa FPsc
Brara.I04289 1.0kb downstream 1.0kb downstream 1000 false A09: 37877587-37878586 Brassica rapa FPsc
Brara.I04289 2.0kb upstream 2.0kb upstream 3407 true A09: 37878587-37881993 Brassica rapa FPsc
Brara.I04289 2.0kb upstream 2.0kb upstream 2000 false A09: 37879994-37881993 Brassica rapa FPsc
Brara.I04289 2.0kb downstream 2.0kb downstream 3407 true A09: 37876587-37879993 Brassica rapa FPsc
Brara.I04289 2.0kb downstream 2.0kb downstream 2000 false A09: 37876587-37878586 Brassica rapa FPsc
Brara.I04289 5.0kb upstream 5.0kb upstream 6407 true A09: 37878587-37884993 Brassica rapa FPsc
Brara.I04289 5.0kb upstream 5.0kb upstream 5000 false A09: 37879994-37884993 Brassica rapa FPsc
Brara.I04289 5.0kb downstream 5.0kb downstream 6407 true A09: 37873587-37879993 Brassica rapa FPsc
Brara.I04289 5.0kb downstream 5.0kb downstream 5000 false A09: 37873587-37878586 Brassica rapa FPsc
Brara.I04289 10.0kb upstream 10.0kb upstream 11407 true A09: 37878587-37889993 Brassica rapa FPsc
Brara.I04289 10.0kb upstream 10.0kb upstream 10000 false A09: 37879994-37889993 Brassica rapa FPsc
Brara.I04289 10.0kb downstream 10.0kb downstream 11407 true A09: 37868587-37879993 Brassica rapa FPsc
Brara.I04289 10.0kb downstream 10.0kb downstream 10000 false A09: 37868587-37878586 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378953 5261 Brassicaceae View MSA
123837058 5264 Brassicales-Malvales View MSA
124347000 5266 SBM View MSA
124245978 5268 Malvidae View MSA
124070026 5270 Rosid View MSA
123741969 5271 Pentapetalae View MSA
122794377 5272 Eudicot View MSA
122048611 5273 Angiosperm View MSA
121348248 5274 Embryophyte View MSA
123426890 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier