Gene : Brara.I04050 B. rapa FPsc v1.3
Defline:  (1 of 5) 2.3.3.1 - Citrate (Si)-synthase / Citrate oxaloacetate-lyase ((pro-3S)-CH(2)COO->acetyl-CoA) Genomic Order:  4050
Name:  ? Brara.I04050 Secondary Identifier:  ? PAC:30645246
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Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc GLYOXYLATE-BYPASS Brassica rapa FPsc pathologic  
BrapaFPsc PWY-5464 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-561 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-5690 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-6549 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.I04050 0.5kb upstream 0.5kb upstream 3864 true A09: 36519263-36523126 Brassica rapa FPsc
Brara.I04050 0.5kb upstream 0.5kb upstream 500 false A09: 36522627-36523126 Brassica rapa FPsc
Brara.I04050 0.5kb downstream 0.5kb downstream 3864 true A09: 36518763-36522626 Brassica rapa FPsc
Brara.I04050 0.5kb downstream 0.5kb downstream 500 false A09: 36518763-36519262 Brassica rapa FPsc
Brara.I04050 1.0kb upstream 1.0kb upstream 4364 true A09: 36519263-36523626 Brassica rapa FPsc
Brara.I04050 1.0kb upstream 1.0kb upstream 1000 false A09: 36522627-36523626 Brassica rapa FPsc
Brara.I04050 1.0kb downstream 1.0kb downstream 4364 true A09: 36518263-36522626 Brassica rapa FPsc
Brara.I04050 1.0kb downstream 1.0kb downstream 1000 false A09: 36518263-36519262 Brassica rapa FPsc
Brara.I04050 2.0kb upstream 2.0kb upstream 5364 true A09: 36519263-36524626 Brassica rapa FPsc
Brara.I04050 2.0kb upstream 2.0kb upstream 2000 false A09: 36522627-36524626 Brassica rapa FPsc
Brara.I04050 2.0kb downstream 2.0kb downstream 5364 true A09: 36517263-36522626 Brassica rapa FPsc
Brara.I04050 2.0kb downstream 2.0kb downstream 2000 false A09: 36517263-36519262 Brassica rapa FPsc
Brara.I04050 5.0kb upstream 5.0kb upstream 8364 true A09: 36519263-36527626 Brassica rapa FPsc
Brara.I04050 5.0kb upstream 5.0kb upstream 5000 false A09: 36522627-36527626 Brassica rapa FPsc
Brara.I04050 5.0kb downstream 5.0kb downstream 8364 true A09: 36514263-36522626 Brassica rapa FPsc
Brara.I04050 5.0kb downstream 5.0kb downstream 5000 false A09: 36514263-36519262 Brassica rapa FPsc
Brara.I04050 10.0kb upstream 10.0kb upstream 13364 true A09: 36519263-36532626 Brassica rapa FPsc
Brara.I04050 10.0kb upstream 10.0kb upstream 10000 false A09: 36522627-36532626 Brassica rapa FPsc
Brara.I04050 10.0kb downstream 10.0kb downstream 13364 true A09: 36509263-36522626 Brassica rapa FPsc
Brara.I04050 10.0kb downstream 10.0kb downstream 10000 false A09: 36509263-36519262 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373975 5261 Brassicaceae View MSA
123836656 5264 Brassicales-Malvales View MSA
124345629 5266 SBM View MSA
124251480 5268 Malvidae View MSA
124065792 5270 Rosid View MSA
123748183 5271 Pentapetalae View MSA
122794190 5272 Eudicot View MSA
122044026 5273 Angiosperm View MSA
121344650 5274 Embryophyte View MSA
123424100 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier