Gene : Brara.C00562 B. rapa FPsc v1.3
Defline:  (1 of 3) PTHR10683:SF6 - TRANSALDOLASE-RELATED Genomic Order:  562
Name:  ? Brara.C00562 Secondary Identifier:  ? PAC:30619144
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc NONOXIPENT-PWY Brassica rapa FPsc pathologic  
BrapaFPsc PENTOSE-P-PWY Brassica rapa FPsc pathologic  
BrapaFPsc PWY-5723 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.C00562 0.5kb upstream 0.5kb upstream 2973 true A03: 2644588-2647560 Brassica rapa FPsc
Brara.C00562 0.5kb upstream 0.5kb upstream 500 false A03: 2647061-2647560 Brassica rapa FPsc
Brara.C00562 0.5kb downstream 0.5kb downstream 2973 true A03: 2644088-2647060 Brassica rapa FPsc
Brara.C00562 0.5kb downstream 0.5kb downstream 500 false A03: 2644088-2644587 Brassica rapa FPsc
Brara.C00562 1.0kb upstream 1.0kb upstream 3473 true A03: 2644588-2648060 Brassica rapa FPsc
Brara.C00562 1.0kb upstream 1.0kb upstream 1000 false A03: 2647061-2648060 Brassica rapa FPsc
Brara.C00562 1.0kb downstream 1.0kb downstream 3473 true A03: 2643588-2647060 Brassica rapa FPsc
Brara.C00562 1.0kb downstream 1.0kb downstream 1000 false A03: 2643588-2644587 Brassica rapa FPsc
Brara.C00562 2.0kb upstream 2.0kb upstream 4473 true A03: 2644588-2649060 Brassica rapa FPsc
Brara.C00562 2.0kb upstream 2.0kb upstream 2000 false A03: 2647061-2649060 Brassica rapa FPsc
Brara.C00562 2.0kb downstream 2.0kb downstream 4473 true A03: 2642588-2647060 Brassica rapa FPsc
Brara.C00562 2.0kb downstream 2.0kb downstream 2000 false A03: 2642588-2644587 Brassica rapa FPsc
Brara.C00562 5.0kb upstream 5.0kb upstream 7473 true A03: 2644588-2652060 Brassica rapa FPsc
Brara.C00562 5.0kb upstream 5.0kb upstream 5000 false A03: 2647061-2652060 Brassica rapa FPsc
Brara.C00562 5.0kb downstream 5.0kb downstream 7473 true A03: 2639588-2647060 Brassica rapa FPsc
Brara.C00562 5.0kb downstream 5.0kb downstream 5000 false A03: 2639588-2644587 Brassica rapa FPsc
Brara.C00562 10.0kb upstream 10.0kb upstream 12473 true A03: 2644588-2657060 Brassica rapa FPsc
Brara.C00562 10.0kb upstream 10.0kb upstream 10000 false A03: 2647061-2657060 Brassica rapa FPsc
Brara.C00562 10.0kb downstream 10.0kb downstream 12473 true A03: 2634588-2647060 Brassica rapa FPsc
Brara.C00562 10.0kb downstream 10.0kb downstream 10000 false A03: 2634588-2644587 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122347979 5261 Brassicaceae Singleton cluster - no MSA
123787404 5264 Brassicales-Malvales Singleton cluster - no MSA
124285480 5266 SBM Singleton cluster - no MSA
124139509 5268 Malvidae Singleton cluster - no MSA
123866881 5270 Rosid Singleton cluster - no MSA
123743559 5271 Pentapetalae View MSA
122786857 5272 Eudicot View MSA
122044911 5273 Angiosperm View MSA
121343866 5274 Embryophyte View MSA
123379934 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier