Gene : Brara.I04978 B. rapa FPsc v1.3
Defline:  (1 of 6) 6.1.1.9 - Valine--tRNA ligase / Valyl-tRNA synthetase Genomic Order:  4978
Name:  ? Brara.I04978 Secondary Identifier:  ? PAC:30644170
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc TRNA-CHARGING-PWY Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.I04978 0.5kb upstream 0.5kb upstream 6455 true A09: 41524393-41530847 Brassica rapa FPsc
Brara.I04978 0.5kb upstream 0.5kb upstream 500 false A09: 41524393-41524892 Brassica rapa FPsc
Brara.I04978 0.5kb downstream 0.5kb downstream 6455 true A09: 41524893-41531347 Brassica rapa FPsc
Brara.I04978 0.5kb downstream 0.5kb downstream 500 false A09: 41530848-41531347 Brassica rapa FPsc
Brara.I04978 1.0kb upstream 1.0kb upstream 6955 true A09: 41523893-41530847 Brassica rapa FPsc
Brara.I04978 1.0kb upstream 1.0kb upstream 1000 false A09: 41523893-41524892 Brassica rapa FPsc
Brara.I04978 1.0kb downstream 1.0kb downstream 6955 true A09: 41524893-41531847 Brassica rapa FPsc
Brara.I04978 1.0kb downstream 1.0kb downstream 1000 false A09: 41530848-41531847 Brassica rapa FPsc
Brara.I04978 2.0kb upstream 2.0kb upstream 7955 true A09: 41522893-41530847 Brassica rapa FPsc
Brara.I04978 2.0kb upstream 2.0kb upstream 2000 false A09: 41522893-41524892 Brassica rapa FPsc
Brara.I04978 2.0kb downstream 2.0kb downstream 7955 true A09: 41524893-41532847 Brassica rapa FPsc
Brara.I04978 2.0kb downstream 2.0kb downstream 2000 false A09: 41530848-41532847 Brassica rapa FPsc
Brara.I04978 5.0kb upstream 5.0kb upstream 10955 true A09: 41519893-41530847 Brassica rapa FPsc
Brara.I04978 5.0kb upstream 5.0kb upstream 5000 false A09: 41519893-41524892 Brassica rapa FPsc
Brara.I04978 5.0kb downstream 5.0kb downstream 10955 true A09: 41524893-41535847 Brassica rapa FPsc
Brara.I04978 5.0kb downstream 5.0kb downstream 5000 false A09: 41530848-41535847 Brassica rapa FPsc
Brara.I04978 10.0kb upstream 10.0kb upstream 15955 true A09: 41514893-41530847 Brassica rapa FPsc
Brara.I04978 10.0kb upstream 10.0kb upstream 10000 false A09: 41514893-41524892 Brassica rapa FPsc
Brara.I04978 10.0kb downstream 10.0kb downstream 15955 true A09: 41524893-41540847 Brassica rapa FPsc
Brara.I04978 10.0kb downstream 10.0kb downstream 10000 false A09: 41530848-41540847 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122381070 5261 Brassicaceae View MSA
123803041 5264 Brassicales-Malvales View MSA
124350639 5266 SBM View MSA
124237752 5268 Malvidae View MSA
124066992 5270 Rosid View MSA
123752070 5271 Pentapetalae View MSA
122788218 5272 Eudicot View MSA
122045228 5273 Angiosperm View MSA
121348805 5274 Embryophyte View MSA
123424302 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier