Gene : Brara.C00341 B. rapa FPsc v1.3
Defline:  (1 of 6) 6.2.1.5 - Succinate--CoA ligase (ADP-forming) / Succinyl-CoA synthetase (ADP-forming) Genomic Order:  341
Name:  ? Brara.C00341 Secondary Identifier:  ? PAC:30617939
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-5464 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-5690 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.C00341 0.5kb upstream 0.5kb upstream 2566 true A03: 1646831-1649396 Brassica rapa FPsc
Brara.C00341 0.5kb upstream 0.5kb upstream 500 false A03: 1646831-1647330 Brassica rapa FPsc
Brara.C00341 0.5kb downstream 0.5kb downstream 2566 true A03: 1647331-1649896 Brassica rapa FPsc
Brara.C00341 0.5kb downstream 0.5kb downstream 500 false A03: 1649397-1649896 Brassica rapa FPsc
Brara.C00341 1.0kb upstream 1.0kb upstream 3066 true A03: 1646331-1649396 Brassica rapa FPsc
Brara.C00341 1.0kb upstream 1.0kb upstream 1000 false A03: 1646331-1647330 Brassica rapa FPsc
Brara.C00341 1.0kb downstream 1.0kb downstream 3066 true A03: 1647331-1650396 Brassica rapa FPsc
Brara.C00341 1.0kb downstream 1.0kb downstream 1000 false A03: 1649397-1650396 Brassica rapa FPsc
Brara.C00341 2.0kb upstream 2.0kb upstream 4066 true A03: 1645331-1649396 Brassica rapa FPsc
Brara.C00341 2.0kb upstream 2.0kb upstream 2000 false A03: 1645331-1647330 Brassica rapa FPsc
Brara.C00341 2.0kb downstream 2.0kb downstream 4066 true A03: 1647331-1651396 Brassica rapa FPsc
Brara.C00341 2.0kb downstream 2.0kb downstream 2000 false A03: 1649397-1651396 Brassica rapa FPsc
Brara.C00341 5.0kb upstream 5.0kb upstream 7066 true A03: 1642331-1649396 Brassica rapa FPsc
Brara.C00341 5.0kb upstream 5.0kb upstream 5000 false A03: 1642331-1647330 Brassica rapa FPsc
Brara.C00341 5.0kb downstream 5.0kb downstream 7066 true A03: 1647331-1654396 Brassica rapa FPsc
Brara.C00341 5.0kb downstream 5.0kb downstream 5000 false A03: 1649397-1654396 Brassica rapa FPsc
Brara.C00341 10.0kb upstream 10.0kb upstream 12066 true A03: 1637331-1649396 Brassica rapa FPsc
Brara.C00341 10.0kb upstream 10.0kb upstream 10000 false A03: 1637331-1647330 Brassica rapa FPsc
Brara.C00341 10.0kb downstream 10.0kb downstream 12066 true A03: 1647331-1659396 Brassica rapa FPsc
Brara.C00341 10.0kb downstream 10.0kb downstream 10000 false A03: 1649397-1659396 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122347642 5261 Brassicaceae Singleton cluster - no MSA
123787132 5264 Brassicales-Malvales Singleton cluster - no MSA
124285218 5266 SBM Singleton cluster - no MSA
124139287 5268 Malvidae Singleton cluster - no MSA
124071271 5270 Rosid View MSA
123744798 5271 Pentapetalae View MSA
122787057 5272 Eudicot View MSA
122044805 5273 Angiosperm View MSA
121349115 5274 Embryophyte View MSA
123424705 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier