Gene : Brara.J00378 B. rapa FPsc v1.3
Defline:  (1 of 3) PTHR12741:SF9 - CALLOSE SYNTHASE 1-RELATED Genomic Order:  378
Name:  ? Brara.J00378 Secondary Identifier:  ? PAC:30611766
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-6773 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.J00378 0.5kb upstream 0.5kb upstream 11411 true A10: 2250092-2261502 Brassica rapa FPsc
Brara.J00378 0.5kb upstream 0.5kb upstream 500 false A10: 2261003-2261502 Brassica rapa FPsc
Brara.J00378 0.5kb downstream 0.5kb downstream 11411 true A10: 2249592-2261002 Brassica rapa FPsc
Brara.J00378 0.5kb downstream 0.5kb downstream 500 false A10: 2249592-2250091 Brassica rapa FPsc
Brara.J00378 1.0kb upstream 1.0kb upstream 11911 true A10: 2250092-2262002 Brassica rapa FPsc
Brara.J00378 1.0kb upstream 1.0kb upstream 1000 false A10: 2261003-2262002 Brassica rapa FPsc
Brara.J00378 1.0kb downstream 1.0kb downstream 11911 true A10: 2249092-2261002 Brassica rapa FPsc
Brara.J00378 1.0kb downstream 1.0kb downstream 1000 false A10: 2249092-2250091 Brassica rapa FPsc
Brara.J00378 2.0kb upstream 2.0kb upstream 12911 true A10: 2250092-2263002 Brassica rapa FPsc
Brara.J00378 2.0kb upstream 2.0kb upstream 2000 false A10: 2261003-2263002 Brassica rapa FPsc
Brara.J00378 2.0kb downstream 2.0kb downstream 12911 true A10: 2248092-2261002 Brassica rapa FPsc
Brara.J00378 2.0kb downstream 2.0kb downstream 2000 false A10: 2248092-2250091 Brassica rapa FPsc
Brara.J00378 5.0kb upstream 5.0kb upstream 15911 true A10: 2250092-2266002 Brassica rapa FPsc
Brara.J00378 5.0kb upstream 5.0kb upstream 5000 false A10: 2261003-2266002 Brassica rapa FPsc
Brara.J00378 5.0kb downstream 5.0kb downstream 15911 true A10: 2245092-2261002 Brassica rapa FPsc
Brara.J00378 5.0kb downstream 5.0kb downstream 5000 false A10: 2245092-2250091 Brassica rapa FPsc
Brara.J00378 10.0kb upstream 10.0kb upstream 20911 true A10: 2250092-2271002 Brassica rapa FPsc
Brara.J00378 10.0kb upstream 10.0kb upstream 10000 false A10: 2261003-2271002 Brassica rapa FPsc
Brara.J00378 10.0kb downstream 10.0kb downstream 20911 true A10: 2240092-2261002 Brassica rapa FPsc
Brara.J00378 10.0kb downstream 10.0kb downstream 10000 false A10: 2240092-2250091 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364153 5261 Brassicaceae View MSA
123798695 5264 Brassicales-Malvales View MSA
124346959 5266 SBM View MSA
124251802 5268 Malvidae View MSA
124072639 5270 Rosid View MSA
123745171 5271 Pentapetalae View MSA
122788947 5272 Eudicot View MSA
122050431 5273 Angiosperm View MSA
121349066 5274 Embryophyte View MSA
123428420 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier