Gene : Brara.C01050 B. rapa FPsc v1.3
Defline:  (1 of 2) 4.6.1.16 - tRNA-intron lyase / tRNA splicing endonuclease Genomic Order:  1050
Name:  ? Brara.C01050 Secondary Identifier:  ? PAC:30619675
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-6689 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.C01050 0.5kb upstream 0.5kb upstream 2236 true A03: 4946797-4949032 Brassica rapa FPsc
Brara.C01050 0.5kb upstream 0.5kb upstream 500 false A03: 4946797-4947296 Brassica rapa FPsc
Brara.C01050 0.5kb downstream 0.5kb downstream 2236 true A03: 4947297-4949532 Brassica rapa FPsc
Brara.C01050 0.5kb downstream 0.5kb downstream 500 false A03: 4949033-4949532 Brassica rapa FPsc
Brara.C01050 1.0kb upstream 1.0kb upstream 2736 true A03: 4946297-4949032 Brassica rapa FPsc
Brara.C01050 1.0kb upstream 1.0kb upstream 1000 false A03: 4946297-4947296 Brassica rapa FPsc
Brara.C01050 1.0kb downstream 1.0kb downstream 2736 true A03: 4947297-4950032 Brassica rapa FPsc
Brara.C01050 1.0kb downstream 1.0kb downstream 1000 false A03: 4949033-4950032 Brassica rapa FPsc
Brara.C01050 2.0kb upstream 2.0kb upstream 3736 true A03: 4945297-4949032 Brassica rapa FPsc
Brara.C01050 2.0kb upstream 2.0kb upstream 2000 false A03: 4945297-4947296 Brassica rapa FPsc
Brara.C01050 2.0kb downstream 2.0kb downstream 3736 true A03: 4947297-4951032 Brassica rapa FPsc
Brara.C01050 2.0kb downstream 2.0kb downstream 2000 false A03: 4949033-4951032 Brassica rapa FPsc
Brara.C01050 5.0kb upstream 5.0kb upstream 6736 true A03: 4942297-4949032 Brassica rapa FPsc
Brara.C01050 5.0kb upstream 5.0kb upstream 5000 false A03: 4942297-4947296 Brassica rapa FPsc
Brara.C01050 5.0kb downstream 5.0kb downstream 6736 true A03: 4947297-4954032 Brassica rapa FPsc
Brara.C01050 5.0kb downstream 5.0kb downstream 5000 false A03: 4949033-4954032 Brassica rapa FPsc
Brara.C01050 10.0kb upstream 10.0kb upstream 11736 true A03: 4937297-4949032 Brassica rapa FPsc
Brara.C01050 10.0kb upstream 10.0kb upstream 10000 false A03: 4937297-4947296 Brassica rapa FPsc
Brara.C01050 10.0kb downstream 10.0kb downstream 11736 true A03: 4947297-4959032 Brassica rapa FPsc
Brara.C01050 10.0kb downstream 10.0kb downstream 10000 false A03: 4949033-4959032 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041240 5273 Angiosperm View MSA
122360142 5261 Brassicaceae View MSA
123840604 5264 Brassicales-Malvales View MSA
124346911 5266 SBM View MSA
124240586 5268 Malvidae View MSA
124064519 5270 Rosid View MSA
123739625 5271 Pentapetalae View MSA
122788641 5272 Eudicot View MSA
123429143 5275 Viridiplantae View MSA
121344093 5274 Embryophyte View MSA

0 Rna Seq Expressions

1 Strain

DB identifier