Gene : Brara.J00275 B. rapa FPsc v1.3
Defline:  (1 of 1) PTHR31332:SF0 - 7-HYDROXYMETHYL CHLOROPHYLL A REDUCTASE, CHLOROPLASTIC Genomic Order:  275
Name:  ? Brara.J00275 Secondary Identifier:  ? PAC:30611570
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-5068 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.J00275 0.5kb upstream 0.5kb upstream 4349 true A10: 1524941-1529289 Brassica rapa FPsc
Brara.J00275 0.5kb upstream 0.5kb upstream 500 false A10: 1528790-1529289 Brassica rapa FPsc
Brara.J00275 0.5kb downstream 0.5kb downstream 4349 true A10: 1524441-1528789 Brassica rapa FPsc
Brara.J00275 0.5kb downstream 0.5kb downstream 500 false A10: 1524441-1524940 Brassica rapa FPsc
Brara.J00275 1.0kb upstream 1.0kb upstream 4849 true A10: 1524941-1529789 Brassica rapa FPsc
Brara.J00275 1.0kb upstream 1.0kb upstream 1000 false A10: 1528790-1529789 Brassica rapa FPsc
Brara.J00275 1.0kb downstream 1.0kb downstream 4849 true A10: 1523941-1528789 Brassica rapa FPsc
Brara.J00275 1.0kb downstream 1.0kb downstream 1000 false A10: 1523941-1524940 Brassica rapa FPsc
Brara.J00275 2.0kb upstream 2.0kb upstream 5849 true A10: 1524941-1530789 Brassica rapa FPsc
Brara.J00275 2.0kb upstream 2.0kb upstream 2000 false A10: 1528790-1530789 Brassica rapa FPsc
Brara.J00275 2.0kb downstream 2.0kb downstream 5849 true A10: 1522941-1528789 Brassica rapa FPsc
Brara.J00275 2.0kb downstream 2.0kb downstream 2000 false A10: 1522941-1524940 Brassica rapa FPsc
Brara.J00275 5.0kb upstream 5.0kb upstream 8849 true A10: 1524941-1533789 Brassica rapa FPsc
Brara.J00275 5.0kb upstream 5.0kb upstream 5000 false A10: 1528790-1533789 Brassica rapa FPsc
Brara.J00275 5.0kb downstream 5.0kb downstream 8849 true A10: 1519941-1528789 Brassica rapa FPsc
Brara.J00275 5.0kb downstream 5.0kb downstream 5000 false A10: 1519941-1524940 Brassica rapa FPsc
Brara.J00275 10.0kb upstream 10.0kb upstream 13849 true A10: 1524941-1538789 Brassica rapa FPsc
Brara.J00275 10.0kb upstream 10.0kb upstream 10000 false A10: 1528790-1538789 Brassica rapa FPsc
Brara.J00275 10.0kb downstream 10.0kb downstream 13849 true A10: 1514941-1528789 Brassica rapa FPsc
Brara.J00275 10.0kb downstream 10.0kb downstream 10000 false A10: 1514941-1524940 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371719 5261 Brassicaceae View MSA
123830449 5264 Brassicales-Malvales View MSA
124343484 5266 SBM View MSA
124240416 5268 Malvidae View MSA
124061681 5270 Rosid View MSA
123745545 5271 Pentapetalae View MSA
122786931 5272 Eudicot View MSA
122042244 5273 Angiosperm View MSA
121347616 5274 Embryophyte View MSA
123428400 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier