Gene : Brara.C00769 B. rapa FPsc v1.3
Defline:  (1 of 2) PTHR13301//PTHR13301:SF28 - X-BOX TRANSCRIPTION FACTOR-RELATED Genomic Order:  769
Name:  ? Brara.C00769 Secondary Identifier:  ? PAC:30617032
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-1001 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.C00769 0.5kb upstream 0.5kb upstream 5649 true A03: 3538815-3544463 Brassica rapa FPsc
Brara.C00769 0.5kb upstream 0.5kb upstream 500 false A03: 3543964-3544463 Brassica rapa FPsc
Brara.C00769 0.5kb downstream 0.5kb downstream 5649 true A03: 3538315-3543963 Brassica rapa FPsc
Brara.C00769 0.5kb downstream 0.5kb downstream 500 false A03: 3538315-3538814 Brassica rapa FPsc
Brara.C00769 1.0kb upstream 1.0kb upstream 6149 true A03: 3538815-3544963 Brassica rapa FPsc
Brara.C00769 1.0kb upstream 1.0kb upstream 1000 false A03: 3543964-3544963 Brassica rapa FPsc
Brara.C00769 1.0kb downstream 1.0kb downstream 6149 true A03: 3537815-3543963 Brassica rapa FPsc
Brara.C00769 1.0kb downstream 1.0kb downstream 1000 false A03: 3537815-3538814 Brassica rapa FPsc
Brara.C00769 2.0kb upstream 2.0kb upstream 7149 true A03: 3538815-3545963 Brassica rapa FPsc
Brara.C00769 2.0kb upstream 2.0kb upstream 2000 false A03: 3543964-3545963 Brassica rapa FPsc
Brara.C00769 2.0kb downstream 2.0kb downstream 7149 true A03: 3536815-3543963 Brassica rapa FPsc
Brara.C00769 2.0kb downstream 2.0kb downstream 2000 false A03: 3536815-3538814 Brassica rapa FPsc
Brara.C00769 5.0kb upstream 5.0kb upstream 10149 true A03: 3538815-3548963 Brassica rapa FPsc
Brara.C00769 5.0kb upstream 5.0kb upstream 5000 false A03: 3543964-3548963 Brassica rapa FPsc
Brara.C00769 5.0kb downstream 5.0kb downstream 10149 true A03: 3533815-3543963 Brassica rapa FPsc
Brara.C00769 5.0kb downstream 5.0kb downstream 5000 false A03: 3533815-3538814 Brassica rapa FPsc
Brara.C00769 10.0kb upstream 10.0kb upstream 15149 true A03: 3538815-3553963 Brassica rapa FPsc
Brara.C00769 10.0kb upstream 10.0kb upstream 10000 false A03: 3543964-3553963 Brassica rapa FPsc
Brara.C00769 10.0kb downstream 10.0kb downstream 15149 true A03: 3528815-3543963 Brassica rapa FPsc
Brara.C00769 10.0kb downstream 10.0kb downstream 10000 false A03: 3528815-3538814 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369978 5261 Brassicaceae View MSA
123836299 5264 Brassicales-Malvales View MSA
124345098 5266 SBM View MSA
124251673 5268 Malvidae View MSA
124065342 5270 Rosid View MSA
123753627 5271 Pentapetalae View MSA
122788990 5272 Eudicot View MSA
122047016 5273 Angiosperm View MSA
121351501 5274 Embryophyte View MSA
123382193 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier