Gene : Brara.I05589 B. rapa FPsc v1.3
Defline:  (1 of 2) PTHR11516:SF25 - PYRUVATE DEHYDROGENASE E1 COMPONENT SUBUNIT ALPHA-3, CHLOROPLASTIC Genomic Order:  5589
Name:  ? Brara.I05589 Secondary Identifier:  ? PAC:30641878
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-5173 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-5464 Brassica rapa FPsc pathologic  
BrapaFPsc PYRUVDEHYD-PWY Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.I05589 0.5kb upstream 0.5kb upstream 2241 true A09: 44632698-44634938 Brassica rapa FPsc
Brara.I05589 0.5kb upstream 0.5kb upstream 500 false A09: 44634439-44634938 Brassica rapa FPsc
Brara.I05589 0.5kb downstream 0.5kb downstream 2241 true A09: 44632198-44634438 Brassica rapa FPsc
Brara.I05589 0.5kb downstream 0.5kb downstream 500 false A09: 44632198-44632697 Brassica rapa FPsc
Brara.I05589 1.0kb upstream 1.0kb upstream 2741 true A09: 44632698-44635438 Brassica rapa FPsc
Brara.I05589 1.0kb upstream 1.0kb upstream 1000 false A09: 44634439-44635438 Brassica rapa FPsc
Brara.I05589 1.0kb downstream 1.0kb downstream 2741 true A09: 44631698-44634438 Brassica rapa FPsc
Brara.I05589 1.0kb downstream 1.0kb downstream 1000 false A09: 44631698-44632697 Brassica rapa FPsc
Brara.I05589 2.0kb upstream 2.0kb upstream 3741 true A09: 44632698-44636438 Brassica rapa FPsc
Brara.I05589 2.0kb upstream 2.0kb upstream 2000 false A09: 44634439-44636438 Brassica rapa FPsc
Brara.I05589 2.0kb downstream 2.0kb downstream 3741 true A09: 44630698-44634438 Brassica rapa FPsc
Brara.I05589 2.0kb downstream 2.0kb downstream 2000 false A09: 44630698-44632697 Brassica rapa FPsc
Brara.I05589 5.0kb upstream 5.0kb upstream 6741 true A09: 44632698-44639438 Brassica rapa FPsc
Brara.I05589 5.0kb upstream 5.0kb upstream 5000 false A09: 44634439-44639438 Brassica rapa FPsc
Brara.I05589 5.0kb downstream 5.0kb downstream 6741 true A09: 44627698-44634438 Brassica rapa FPsc
Brara.I05589 5.0kb downstream 5.0kb downstream 5000 false A09: 44627698-44632697 Brassica rapa FPsc
Brara.I05589 10.0kb upstream 10.0kb upstream 11741 true A09: 44632698-44644438 Brassica rapa FPsc
Brara.I05589 10.0kb upstream 10.0kb upstream 10000 false A09: 44634439-44644438 Brassica rapa FPsc
Brara.I05589 10.0kb downstream 10.0kb downstream 11741 true A09: 44622698-44634438 Brassica rapa FPsc
Brara.I05589 10.0kb downstream 10.0kb downstream 10000 false A09: 44622698-44632697 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375294 5261 Brassicaceae View MSA
123835447 5264 Brassicales-Malvales View MSA
124343284 5266 SBM View MSA
124241416 5268 Malvidae View MSA
124066481 5270 Rosid View MSA
123745685 5271 Pentapetalae View MSA
122791580 5272 Eudicot View MSA
122044804 5273 Angiosperm View MSA
121347425 5274 Embryophyte View MSA
123423942 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier