Gene : Brara.C00859 B. rapa FPsc v1.3
Defline:  (1 of 3) PTHR11570:SF1 - S-ADENOSYLMETHIONINE DECARBOXYLASE PROENZYME Genomic Order:  859
Name:  ? Brara.C00859 Secondary Identifier:  ? PAC:30617610
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc ARGSPECAT-PWY Brassica rapa FPsc pathologic  
BrapaFPsc BSUBPOLYAMSYN-PWY Brassica rapa FPsc pathologic  
BrapaFPsc PWY-7528 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.C00859 0.5kb upstream 0.5kb upstream 1998 true A03: 3985394-3987391 Brassica rapa FPsc
Brara.C00859 0.5kb upstream 0.5kb upstream 500 false A03: 3986892-3987391 Brassica rapa FPsc
Brara.C00859 0.5kb downstream 0.5kb downstream 1998 true A03: 3984894-3986891 Brassica rapa FPsc
Brara.C00859 0.5kb downstream 0.5kb downstream 500 false A03: 3984894-3985393 Brassica rapa FPsc
Brara.C00859 1.0kb upstream 1.0kb upstream 2498 true A03: 3985394-3987891 Brassica rapa FPsc
Brara.C00859 1.0kb upstream 1.0kb upstream 1000 false A03: 3986892-3987891 Brassica rapa FPsc
Brara.C00859 1.0kb downstream 1.0kb downstream 2498 true A03: 3984394-3986891 Brassica rapa FPsc
Brara.C00859 1.0kb downstream 1.0kb downstream 1000 false A03: 3984394-3985393 Brassica rapa FPsc
Brara.C00859 2.0kb upstream 2.0kb upstream 3498 true A03: 3985394-3988891 Brassica rapa FPsc
Brara.C00859 2.0kb upstream 2.0kb upstream 2000 false A03: 3986892-3988891 Brassica rapa FPsc
Brara.C00859 2.0kb downstream 2.0kb downstream 3498 true A03: 3983394-3986891 Brassica rapa FPsc
Brara.C00859 2.0kb downstream 2.0kb downstream 2000 false A03: 3983394-3985393 Brassica rapa FPsc
Brara.C00859 5.0kb upstream 5.0kb upstream 6498 true A03: 3985394-3991891 Brassica rapa FPsc
Brara.C00859 5.0kb upstream 5.0kb upstream 5000 false A03: 3986892-3991891 Brassica rapa FPsc
Brara.C00859 5.0kb downstream 5.0kb downstream 6498 true A03: 3980394-3986891 Brassica rapa FPsc
Brara.C00859 5.0kb downstream 5.0kb downstream 5000 false A03: 3980394-3985393 Brassica rapa FPsc
Brara.C00859 10.0kb upstream 10.0kb upstream 11498 true A03: 3985394-3996891 Brassica rapa FPsc
Brara.C00859 10.0kb upstream 10.0kb upstream 10000 false A03: 3986892-3996891 Brassica rapa FPsc
Brara.C00859 10.0kb downstream 10.0kb downstream 11498 true A03: 3975394-3986891 Brassica rapa FPsc
Brara.C00859 10.0kb downstream 10.0kb downstream 10000 false A03: 3975394-3985393 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122347549 5261 Brassicaceae Singleton cluster - no MSA
123787055 5264 Brassicales-Malvales Singleton cluster - no MSA
124285142 5266 SBM Singleton cluster - no MSA
124139219 5268 Malvidae Singleton cluster - no MSA
124051842 5270 Rosid View MSA
123751266 5271 Pentapetalae View MSA
122795098 5272 Eudicot View MSA
122049143 5273 Angiosperm View MSA
121348944 5274 Embryophyte View MSA
123423800 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier