Gene : Brara.I05514 B. rapa FPsc v1.3
Defline:  (1 of 1) PF00533//PF13771//PF14634 - BRCA1 C Terminus (BRCT) domain (BRCT) // PHD-like zinc-binding domain (zf-HC5HC2H) // zinc-RING finger domain (zf-RING_5) Genomic Order:  5514
Name:  ? Brara.I05514 Secondary Identifier:  ? PAC:30646150
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-7511 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.I05514 0.5kb upstream 0.5kb upstream 4036 true A09: 44294168-44298203 Brassica rapa FPsc
Brara.I05514 0.5kb upstream 0.5kb upstream 500 false A09: 44297704-44298203 Brassica rapa FPsc
Brara.I05514 0.5kb downstream 0.5kb downstream 4036 true A09: 44293668-44297703 Brassica rapa FPsc
Brara.I05514 0.5kb downstream 0.5kb downstream 500 false A09: 44293668-44294167 Brassica rapa FPsc
Brara.I05514 1.0kb upstream 1.0kb upstream 4536 true A09: 44294168-44298703 Brassica rapa FPsc
Brara.I05514 1.0kb upstream 1.0kb upstream 1000 false A09: 44297704-44298703 Brassica rapa FPsc
Brara.I05514 1.0kb downstream 1.0kb downstream 4536 true A09: 44293168-44297703 Brassica rapa FPsc
Brara.I05514 1.0kb downstream 1.0kb downstream 1000 false A09: 44293168-44294167 Brassica rapa FPsc
Brara.I05514 2.0kb upstream 2.0kb upstream 5536 true A09: 44294168-44299703 Brassica rapa FPsc
Brara.I05514 2.0kb upstream 2.0kb upstream 2000 false A09: 44297704-44299703 Brassica rapa FPsc
Brara.I05514 2.0kb downstream 2.0kb downstream 5536 true A09: 44292168-44297703 Brassica rapa FPsc
Brara.I05514 2.0kb downstream 2.0kb downstream 2000 false A09: 44292168-44294167 Brassica rapa FPsc
Brara.I05514 5.0kb upstream 5.0kb upstream 8536 true A09: 44294168-44302703 Brassica rapa FPsc
Brara.I05514 5.0kb upstream 5.0kb upstream 5000 false A09: 44297704-44302703 Brassica rapa FPsc
Brara.I05514 5.0kb downstream 5.0kb downstream 8536 true A09: 44289168-44297703 Brassica rapa FPsc
Brara.I05514 5.0kb downstream 5.0kb downstream 5000 false A09: 44289168-44294167 Brassica rapa FPsc
Brara.I05514 10.0kb upstream 10.0kb upstream 13536 true A09: 44294168-44307703 Brassica rapa FPsc
Brara.I05514 10.0kb upstream 10.0kb upstream 10000 false A09: 44297704-44307703 Brassica rapa FPsc
Brara.I05514 10.0kb downstream 10.0kb downstream 13536 true A09: 44284168-44297703 Brassica rapa FPsc
Brara.I05514 10.0kb downstream 10.0kb downstream 10000 false A09: 44284168-44294167 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368475 5261 Brassicaceae View MSA
123832266 5264 Brassicales-Malvales View MSA
124344562 5266 SBM View MSA
124249547 5268 Malvidae View MSA
124074324 5270 Rosid View MSA
123745741 5271 Pentapetalae View MSA
122790490 5272 Eudicot View MSA
122049651 5273 Angiosperm View MSA
121346797 5274 Embryophyte View MSA
123380447 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier