Gene : Brara.I05518 B. rapa FPsc v1.3
Defline:  (1 of 5) PTHR33447:SF2 - PROTEIN PCS-1, ISOFORM A Genomic Order:  5518
Name:  ? Brara.I05518 Secondary Identifier:  ? PAC:30646309
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-6745 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.I05518 0.5kb upstream 0.5kb upstream 3343 true A09: 44307378-44310720 Brassica rapa FPsc
Brara.I05518 0.5kb upstream 0.5kb upstream 500 false A09: 44307378-44307877 Brassica rapa FPsc
Brara.I05518 0.5kb downstream 0.5kb downstream 3343 true A09: 44307878-44311220 Brassica rapa FPsc
Brara.I05518 0.5kb downstream 0.5kb downstream 500 false A09: 44310721-44311220 Brassica rapa FPsc
Brara.I05518 1.0kb upstream 1.0kb upstream 3843 true A09: 44306878-44310720 Brassica rapa FPsc
Brara.I05518 1.0kb upstream 1.0kb upstream 1000 false A09: 44306878-44307877 Brassica rapa FPsc
Brara.I05518 1.0kb downstream 1.0kb downstream 3843 true A09: 44307878-44311720 Brassica rapa FPsc
Brara.I05518 1.0kb downstream 1.0kb downstream 1000 false A09: 44310721-44311720 Brassica rapa FPsc
Brara.I05518 2.0kb upstream 2.0kb upstream 4843 true A09: 44305878-44310720 Brassica rapa FPsc
Brara.I05518 2.0kb upstream 2.0kb upstream 2000 false A09: 44305878-44307877 Brassica rapa FPsc
Brara.I05518 2.0kb downstream 2.0kb downstream 4843 true A09: 44307878-44312720 Brassica rapa FPsc
Brara.I05518 2.0kb downstream 2.0kb downstream 2000 false A09: 44310721-44312720 Brassica rapa FPsc
Brara.I05518 5.0kb upstream 5.0kb upstream 7843 true A09: 44302878-44310720 Brassica rapa FPsc
Brara.I05518 5.0kb upstream 5.0kb upstream 5000 false A09: 44302878-44307877 Brassica rapa FPsc
Brara.I05518 5.0kb downstream 5.0kb downstream 7843 true A09: 44307878-44315720 Brassica rapa FPsc
Brara.I05518 5.0kb downstream 5.0kb downstream 5000 false A09: 44310721-44315720 Brassica rapa FPsc
Brara.I05518 10.0kb upstream 10.0kb upstream 12843 true A09: 44297878-44310720 Brassica rapa FPsc
Brara.I05518 10.0kb upstream 10.0kb upstream 10000 false A09: 44297878-44307877 Brassica rapa FPsc
Brara.I05518 10.0kb downstream 10.0kb downstream 12843 true A09: 44307878-44320720 Brassica rapa FPsc
Brara.I05518 10.0kb downstream 10.0kb downstream 10000 false A09: 44310721-44320720 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029935 5273 Angiosperm View MSA
122378047 5261 Brassicaceae View MSA
123801724 5264 Brassicales-Malvales View MSA
124298997 5266 SBM View MSA
124150517 5268 Malvidae View MSA
124051540 5270 Rosid View MSA
123620201 5271 Pentapetalae View MSA
122654615 5272 Eudicot View MSA
121299186 5274 Embryophyte View MSA
123337095 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier