Gene : Brara.C00758 B. rapa FPsc v1.3
Defline:  (1 of 3) 2.5.1.32 - 15-cis-phytoene synthase / PSase Genomic Order:  758
Name:  ? Brara.C00758 Secondary Identifier:  ? PAC:30619854
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc CAROTENOID-PWY Brassica rapa FPsc pathologic  
BrapaFPsc PWY-6475 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.C00758 0.5kb upstream 0.5kb upstream 3015 true A03: 3462822-3465836 Brassica rapa FPsc
Brara.C00758 0.5kb upstream 0.5kb upstream 500 false A03: 3465337-3465836 Brassica rapa FPsc
Brara.C00758 0.5kb downstream 0.5kb downstream 3015 true A03: 3462322-3465336 Brassica rapa FPsc
Brara.C00758 0.5kb downstream 0.5kb downstream 500 false A03: 3462322-3462821 Brassica rapa FPsc
Brara.C00758 1.0kb upstream 1.0kb upstream 3515 true A03: 3462822-3466336 Brassica rapa FPsc
Brara.C00758 1.0kb upstream 1.0kb upstream 1000 false A03: 3465337-3466336 Brassica rapa FPsc
Brara.C00758 1.0kb downstream 1.0kb downstream 3515 true A03: 3461822-3465336 Brassica rapa FPsc
Brara.C00758 1.0kb downstream 1.0kb downstream 1000 false A03: 3461822-3462821 Brassica rapa FPsc
Brara.C00758 2.0kb upstream 2.0kb upstream 4515 true A03: 3462822-3467336 Brassica rapa FPsc
Brara.C00758 2.0kb upstream 2.0kb upstream 2000 false A03: 3465337-3467336 Brassica rapa FPsc
Brara.C00758 2.0kb downstream 2.0kb downstream 4515 true A03: 3460822-3465336 Brassica rapa FPsc
Brara.C00758 2.0kb downstream 2.0kb downstream 2000 false A03: 3460822-3462821 Brassica rapa FPsc
Brara.C00758 5.0kb upstream 5.0kb upstream 7515 true A03: 3462822-3470336 Brassica rapa FPsc
Brara.C00758 5.0kb upstream 5.0kb upstream 5000 false A03: 3465337-3470336 Brassica rapa FPsc
Brara.C00758 5.0kb downstream 5.0kb downstream 7515 true A03: 3457822-3465336 Brassica rapa FPsc
Brara.C00758 5.0kb downstream 5.0kb downstream 5000 false A03: 3457822-3462821 Brassica rapa FPsc
Brara.C00758 10.0kb upstream 10.0kb upstream 12515 true A03: 3462822-3475336 Brassica rapa FPsc
Brara.C00758 10.0kb upstream 10.0kb upstream 10000 false A03: 3465337-3475336 Brassica rapa FPsc
Brara.C00758 10.0kb downstream 10.0kb downstream 12515 true A03: 3452822-3465336 Brassica rapa FPsc
Brara.C00758 10.0kb downstream 10.0kb downstream 10000 false A03: 3452822-3462821 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041269 5273 Angiosperm View MSA
122348180 5261 Brassicaceae Singleton cluster - no MSA
123787568 5264 Brassicales-Malvales Singleton cluster - no MSA
124285635 5266 SBM Singleton cluster - no MSA
124139633 5268 Malvidae Singleton cluster - no MSA
123866985 5270 Rosid Singleton cluster - no MSA
123743557 5271 Pentapetalae View MSA
122795955 5272 Eudicot View MSA
121345575 5274 Embryophyte View MSA
123426823 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier