Gene : Brara.C01608 B. rapa FPsc v1.3
Defline:  (1 of 9) PTHR11685:SF154 - E3 UBIQUITIN-PROTEIN LIGASE ARI5-RELATED Genomic Order:  1608
Name:  ? Brara.C01608 Secondary Identifier:  ? PAC:30615004
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-7511 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.C01608 0.5kb upstream 0.5kb upstream 5697 true A03: 7812272-7817968 Brassica rapa FPsc
Brara.C01608 0.5kb upstream 0.5kb upstream 500 false A03: 7817469-7817968 Brassica rapa FPsc
Brara.C01608 0.5kb downstream 0.5kb downstream 5697 true A03: 7811772-7817468 Brassica rapa FPsc
Brara.C01608 0.5kb downstream 0.5kb downstream 500 false A03: 7811772-7812271 Brassica rapa FPsc
Brara.C01608 1.0kb upstream 1.0kb upstream 6197 true A03: 7812272-7818468 Brassica rapa FPsc
Brara.C01608 1.0kb upstream 1.0kb upstream 1000 false A03: 7817469-7818468 Brassica rapa FPsc
Brara.C01608 1.0kb downstream 1.0kb downstream 6197 true A03: 7811272-7817468 Brassica rapa FPsc
Brara.C01608 1.0kb downstream 1.0kb downstream 1000 false A03: 7811272-7812271 Brassica rapa FPsc
Brara.C01608 2.0kb upstream 2.0kb upstream 7197 true A03: 7812272-7819468 Brassica rapa FPsc
Brara.C01608 2.0kb upstream 2.0kb upstream 2000 false A03: 7817469-7819468 Brassica rapa FPsc
Brara.C01608 2.0kb downstream 2.0kb downstream 7197 true A03: 7810272-7817468 Brassica rapa FPsc
Brara.C01608 2.0kb downstream 2.0kb downstream 2000 false A03: 7810272-7812271 Brassica rapa FPsc
Brara.C01608 5.0kb upstream 5.0kb upstream 10197 true A03: 7812272-7822468 Brassica rapa FPsc
Brara.C01608 5.0kb upstream 5.0kb upstream 5000 false A03: 7817469-7822468 Brassica rapa FPsc
Brara.C01608 5.0kb downstream 5.0kb downstream 10197 true A03: 7807272-7817468 Brassica rapa FPsc
Brara.C01608 5.0kb downstream 5.0kb downstream 5000 false A03: 7807272-7812271 Brassica rapa FPsc
Brara.C01608 10.0kb upstream 10.0kb upstream 15197 true A03: 7812272-7827468 Brassica rapa FPsc
Brara.C01608 10.0kb upstream 10.0kb upstream 10000 false A03: 7817469-7827468 Brassica rapa FPsc
Brara.C01608 10.0kb downstream 10.0kb downstream 15197 true A03: 7802272-7817468 Brassica rapa FPsc
Brara.C01608 10.0kb downstream 10.0kb downstream 10000 false A03: 7802272-7812271 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361785 5261 Brassicaceae View MSA
123836380 5264 Brassicales-Malvales View MSA
124348050 5266 SBM View MSA
124248365 5268 Malvidae View MSA
124071269 5270 Rosid View MSA
123742457 5271 Pentapetalae View MSA
122787924 5272 Eudicot View MSA
122045508 5273 Angiosperm View MSA
121343931 5274 Embryophyte View MSA
123428000 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier