Gene : Brara.C01642 B. rapa FPsc v1.3
Defline:  (1 of 6) 2.7.7.15 - Choline-phosphate cytidylyltransferase / Phosphorylcholine transferase Genomic Order:  1642
Name:  ? Brara.C01642 Secondary Identifier:  ? PAC:30617477
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-3561 Brassica rapa FPsc pathologic  
BrapaFPsc PWY3O-450 Brassica rapa FPsc pathologic  
BrapaFPsc PWY4FS-2 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.C01642 0.5kb upstream 0.5kb upstream 3190 true A03: 7975174-7978363 Brassica rapa FPsc
Brara.C01642 0.5kb upstream 0.5kb upstream 500 false A03: 7975174-7975673 Brassica rapa FPsc
Brara.C01642 0.5kb downstream 0.5kb downstream 3190 true A03: 7975674-7978863 Brassica rapa FPsc
Brara.C01642 0.5kb downstream 0.5kb downstream 500 false A03: 7978364-7978863 Brassica rapa FPsc
Brara.C01642 1.0kb upstream 1.0kb upstream 3690 true A03: 7974674-7978363 Brassica rapa FPsc
Brara.C01642 1.0kb upstream 1.0kb upstream 1000 false A03: 7974674-7975673 Brassica rapa FPsc
Brara.C01642 1.0kb downstream 1.0kb downstream 3690 true A03: 7975674-7979363 Brassica rapa FPsc
Brara.C01642 1.0kb downstream 1.0kb downstream 1000 false A03: 7978364-7979363 Brassica rapa FPsc
Brara.C01642 2.0kb upstream 2.0kb upstream 4690 true A03: 7973674-7978363 Brassica rapa FPsc
Brara.C01642 2.0kb upstream 2.0kb upstream 2000 false A03: 7973674-7975673 Brassica rapa FPsc
Brara.C01642 2.0kb downstream 2.0kb downstream 4690 true A03: 7975674-7980363 Brassica rapa FPsc
Brara.C01642 2.0kb downstream 2.0kb downstream 2000 false A03: 7978364-7980363 Brassica rapa FPsc
Brara.C01642 5.0kb upstream 5.0kb upstream 7690 true A03: 7970674-7978363 Brassica rapa FPsc
Brara.C01642 5.0kb upstream 5.0kb upstream 5000 false A03: 7970674-7975673 Brassica rapa FPsc
Brara.C01642 5.0kb downstream 5.0kb downstream 7690 true A03: 7975674-7983363 Brassica rapa FPsc
Brara.C01642 5.0kb downstream 5.0kb downstream 5000 false A03: 7978364-7983363 Brassica rapa FPsc
Brara.C01642 10.0kb upstream 10.0kb upstream 12690 true A03: 7965674-7978363 Brassica rapa FPsc
Brara.C01642 10.0kb upstream 10.0kb upstream 10000 false A03: 7965674-7975673 Brassica rapa FPsc
Brara.C01642 10.0kb downstream 10.0kb downstream 12690 true A03: 7975674-7988363 Brassica rapa FPsc
Brara.C01642 10.0kb downstream 10.0kb downstream 10000 false A03: 7978364-7988363 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122347510 5261 Brassicaceae Singleton cluster - no MSA
123787021 5264 Brassicales-Malvales Singleton cluster - no MSA
124285109 5266 SBM Singleton cluster - no MSA
124139191 5268 Malvidae Singleton cluster - no MSA
124069985 5270 Rosid View MSA
123749333 5271 Pentapetalae View MSA
122792398 5272 Eudicot View MSA
122047197 5273 Angiosperm View MSA
121348751 5274 Embryophyte View MSA
123428717 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier