Gene : Brara.C01657 B. rapa FPsc v1.3
Defline:  (1 of 1) PTHR32098:SF5 - LYCOPENE BETA/EPSILON CYCLASE PROTEIN Genomic Order:  1657
Name:  ? Brara.C01657 Secondary Identifier:  ? PAC:30617089
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc CAROTENOID-PWY Brassica rapa FPsc pathologic  
BrapaFPsc PWY-5943 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-5947 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.C01657 0.5kb upstream 0.5kb upstream 4277 true A03: 8041456-8045732 Brassica rapa FPsc
Brara.C01657 0.5kb upstream 0.5kb upstream 500 false A03: 8045233-8045732 Brassica rapa FPsc
Brara.C01657 0.5kb downstream 0.5kb downstream 4277 true A03: 8040956-8045232 Brassica rapa FPsc
Brara.C01657 0.5kb downstream 0.5kb downstream 500 false A03: 8040956-8041455 Brassica rapa FPsc
Brara.C01657 1.0kb upstream 1.0kb upstream 4777 true A03: 8041456-8046232 Brassica rapa FPsc
Brara.C01657 1.0kb upstream 1.0kb upstream 1000 false A03: 8045233-8046232 Brassica rapa FPsc
Brara.C01657 1.0kb downstream 1.0kb downstream 4777 true A03: 8040456-8045232 Brassica rapa FPsc
Brara.C01657 1.0kb downstream 1.0kb downstream 1000 false A03: 8040456-8041455 Brassica rapa FPsc
Brara.C01657 2.0kb upstream 2.0kb upstream 5777 true A03: 8041456-8047232 Brassica rapa FPsc
Brara.C01657 2.0kb upstream 2.0kb upstream 2000 false A03: 8045233-8047232 Brassica rapa FPsc
Brara.C01657 2.0kb downstream 2.0kb downstream 5777 true A03: 8039456-8045232 Brassica rapa FPsc
Brara.C01657 2.0kb downstream 2.0kb downstream 2000 false A03: 8039456-8041455 Brassica rapa FPsc
Brara.C01657 5.0kb upstream 5.0kb upstream 8777 true A03: 8041456-8050232 Brassica rapa FPsc
Brara.C01657 5.0kb upstream 5.0kb upstream 5000 false A03: 8045233-8050232 Brassica rapa FPsc
Brara.C01657 5.0kb downstream 5.0kb downstream 8777 true A03: 8036456-8045232 Brassica rapa FPsc
Brara.C01657 5.0kb downstream 5.0kb downstream 5000 false A03: 8036456-8041455 Brassica rapa FPsc
Brara.C01657 10.0kb upstream 10.0kb upstream 13777 true A03: 8041456-8055232 Brassica rapa FPsc
Brara.C01657 10.0kb upstream 10.0kb upstream 10000 false A03: 8045233-8055232 Brassica rapa FPsc
Brara.C01657 10.0kb downstream 10.0kb downstream 13777 true A03: 8031456-8045232 Brassica rapa FPsc
Brara.C01657 10.0kb downstream 10.0kb downstream 10000 false A03: 8031456-8041455 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375141 5261 Brassicaceae View MSA
123829995 5264 Brassicales-Malvales View MSA
124340532 5266 SBM View MSA
124238742 5268 Malvidae View MSA
124061081 5270 Rosid View MSA
123739346 5271 Pentapetalae View MSA
122787287 5272 Eudicot View MSA
122042056 5273 Angiosperm View MSA
121350076 5274 Embryophyte View MSA
123425500 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier