Gene : Brara.J01098 B. rapa FPsc v1.3
Defline:  (1 of 1) PTHR23382:SF5 - MALATE DEHYDROGENASE Genomic Order:  1098
Name:  ? Brara.J01098 Secondary Identifier:  ? PAC:30613121
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Sequence Feature Displayer

Ontology Annotation Displayer

7 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc GLUCONEO-PWY Brassica rapa FPsc pathologic  
BrapaFPsc GLYOXYLATE-BYPASS Brassica rapa FPsc pathologic  
BrapaFPsc PWY-5464 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-561 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-5690 Brassica rapa FPsc pathologic  
BrapaFPsc PWY66-399 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-7115 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.J01098 0.5kb upstream 0.5kb upstream 1821 true A10: 10474590-10476410 Brassica rapa FPsc
Brara.J01098 0.5kb upstream 0.5kb upstream 500 false A10: 10474590-10475089 Brassica rapa FPsc
Brara.J01098 0.5kb downstream 0.5kb downstream 1821 true A10: 10475090-10476910 Brassica rapa FPsc
Brara.J01098 0.5kb downstream 0.5kb downstream 500 false A10: 10476411-10476910 Brassica rapa FPsc
Brara.J01098 1.0kb upstream 1.0kb upstream 2321 true A10: 10474090-10476410 Brassica rapa FPsc
Brara.J01098 1.0kb upstream 1.0kb upstream 1000 false A10: 10474090-10475089 Brassica rapa FPsc
Brara.J01098 1.0kb downstream 1.0kb downstream 2321 true A10: 10475090-10477410 Brassica rapa FPsc
Brara.J01098 1.0kb downstream 1.0kb downstream 1000 false A10: 10476411-10477410 Brassica rapa FPsc
Brara.J01098 2.0kb upstream 2.0kb upstream 3321 true A10: 10473090-10476410 Brassica rapa FPsc
Brara.J01098 2.0kb upstream 2.0kb upstream 2000 false A10: 10473090-10475089 Brassica rapa FPsc
Brara.J01098 2.0kb downstream 2.0kb downstream 3321 true A10: 10475090-10478410 Brassica rapa FPsc
Brara.J01098 2.0kb downstream 2.0kb downstream 2000 false A10: 10476411-10478410 Brassica rapa FPsc
Brara.J01098 5.0kb upstream 5.0kb upstream 6321 true A10: 10470090-10476410 Brassica rapa FPsc
Brara.J01098 5.0kb upstream 5.0kb upstream 5000 false A10: 10470090-10475089 Brassica rapa FPsc
Brara.J01098 5.0kb downstream 5.0kb downstream 6321 true A10: 10475090-10481410 Brassica rapa FPsc
Brara.J01098 5.0kb downstream 5.0kb downstream 5000 false A10: 10476411-10481410 Brassica rapa FPsc
Brara.J01098 10.0kb upstream 10.0kb upstream 11321 true A10: 10465090-10476410 Brassica rapa FPsc
Brara.J01098 10.0kb upstream 10.0kb upstream 10000 false A10: 10465090-10475089 Brassica rapa FPsc
Brara.J01098 10.0kb downstream 10.0kb downstream 11321 true A10: 10475090-10486410 Brassica rapa FPsc
Brara.J01098 10.0kb downstream 10.0kb downstream 10000 false A10: 10476411-10486410 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361174 5261 Brassicaceae View MSA
123830714 5264 Brassicales-Malvales View MSA
124349239 5266 SBM View MSA
124248989 5268 Malvidae View MSA
124071542 5270 Rosid View MSA
123746984 5271 Pentapetalae View MSA
122786587 5272 Eudicot View MSA
122050336 5273 Angiosperm View MSA
121345674 5274 Embryophyte View MSA
123426378 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier