Gene : Brara.J01102 B. rapa FPsc v1.3
Defline:  (1 of 2) PTHR23416:SF2 - SERINE ACETYLTRANSFERASE 5 Genomic Order:  1102
Name:  ? Brara.J01102 Secondary Identifier:  ? PAC:30612392
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc CYSTSYN-PWY Brassica rapa FPsc pathologic  
BrapaFPsc PWY-6936 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.J01102 0.5kb upstream 0.5kb upstream 1735 true A10: 10488929-10490663 Brassica rapa FPsc
Brara.J01102 0.5kb upstream 0.5kb upstream 500 false A10: 10490164-10490663 Brassica rapa FPsc
Brara.J01102 0.5kb downstream 0.5kb downstream 1735 true A10: 10488429-10490163 Brassica rapa FPsc
Brara.J01102 0.5kb downstream 0.5kb downstream 500 false A10: 10488429-10488928 Brassica rapa FPsc
Brara.J01102 1.0kb upstream 1.0kb upstream 2235 true A10: 10488929-10491163 Brassica rapa FPsc
Brara.J01102 1.0kb upstream 1.0kb upstream 1000 false A10: 10490164-10491163 Brassica rapa FPsc
Brara.J01102 1.0kb downstream 1.0kb downstream 2235 true A10: 10487929-10490163 Brassica rapa FPsc
Brara.J01102 1.0kb downstream 1.0kb downstream 1000 false A10: 10487929-10488928 Brassica rapa FPsc
Brara.J01102 2.0kb upstream 2.0kb upstream 3235 true A10: 10488929-10492163 Brassica rapa FPsc
Brara.J01102 2.0kb upstream 2.0kb upstream 2000 false A10: 10490164-10492163 Brassica rapa FPsc
Brara.J01102 2.0kb downstream 2.0kb downstream 3235 true A10: 10486929-10490163 Brassica rapa FPsc
Brara.J01102 2.0kb downstream 2.0kb downstream 2000 false A10: 10486929-10488928 Brassica rapa FPsc
Brara.J01102 5.0kb upstream 5.0kb upstream 6235 true A10: 10488929-10495163 Brassica rapa FPsc
Brara.J01102 5.0kb upstream 5.0kb upstream 5000 false A10: 10490164-10495163 Brassica rapa FPsc
Brara.J01102 5.0kb downstream 5.0kb downstream 6235 true A10: 10483929-10490163 Brassica rapa FPsc
Brara.J01102 5.0kb downstream 5.0kb downstream 5000 false A10: 10483929-10488928 Brassica rapa FPsc
Brara.J01102 10.0kb upstream 10.0kb upstream 11235 true A10: 10488929-10500163 Brassica rapa FPsc
Brara.J01102 10.0kb upstream 10.0kb upstream 10000 false A10: 10490164-10500163 Brassica rapa FPsc
Brara.J01102 10.0kb downstream 10.0kb downstream 11235 true A10: 10478929-10490163 Brassica rapa FPsc
Brara.J01102 10.0kb downstream 10.0kb downstream 10000 false A10: 10478929-10488928 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122346172 5261 Brassicaceae Singleton cluster - no MSA
123785902 5264 Brassicales-Malvales Singleton cluster - no MSA
124284027 5266 SBM Singleton cluster - no MSA
124250792 5268 Malvidae View MSA
124068098 5270 Rosid View MSA
123738273 5271 Pentapetalae View MSA
122789751 5272 Eudicot View MSA
122047158 5273 Angiosperm View MSA
121348374 5274 Embryophyte View MSA
123426625 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier