Gene : Brara.C01444 B. rapa FPsc v1.3
Defline:  (1 of 1) PTHR20836:SF2 - 4-HYDROXY-TETRAHYDRODIPICOLINATE REDUCTASE 3, CHLOROPLASTIC-RELATED Genomic Order:  1444
Name:  ? Brara.C01444 Secondary Identifier:  ? PAC:30615099
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-5097 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-724 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.C01444 0.5kb upstream 0.5kb upstream 2508 true A03: 6933922-6936429 Brassica rapa FPsc
Brara.C01444 0.5kb upstream 0.5kb upstream 500 false A03: 6935930-6936429 Brassica rapa FPsc
Brara.C01444 0.5kb downstream 0.5kb downstream 2508 true A03: 6933422-6935929 Brassica rapa FPsc
Brara.C01444 0.5kb downstream 0.5kb downstream 500 false A03: 6933422-6933921 Brassica rapa FPsc
Brara.C01444 1.0kb upstream 1.0kb upstream 3008 true A03: 6933922-6936929 Brassica rapa FPsc
Brara.C01444 1.0kb upstream 1.0kb upstream 1000 false A03: 6935930-6936929 Brassica rapa FPsc
Brara.C01444 1.0kb downstream 1.0kb downstream 3008 true A03: 6932922-6935929 Brassica rapa FPsc
Brara.C01444 1.0kb downstream 1.0kb downstream 1000 false A03: 6932922-6933921 Brassica rapa FPsc
Brara.C01444 2.0kb upstream 2.0kb upstream 4008 true A03: 6933922-6937929 Brassica rapa FPsc
Brara.C01444 2.0kb upstream 2.0kb upstream 2000 false A03: 6935930-6937929 Brassica rapa FPsc
Brara.C01444 2.0kb downstream 2.0kb downstream 4008 true A03: 6931922-6935929 Brassica rapa FPsc
Brara.C01444 2.0kb downstream 2.0kb downstream 2000 false A03: 6931922-6933921 Brassica rapa FPsc
Brara.C01444 5.0kb upstream 5.0kb upstream 7008 true A03: 6933922-6940929 Brassica rapa FPsc
Brara.C01444 5.0kb upstream 5.0kb upstream 5000 false A03: 6935930-6940929 Brassica rapa FPsc
Brara.C01444 5.0kb downstream 5.0kb downstream 7008 true A03: 6928922-6935929 Brassica rapa FPsc
Brara.C01444 5.0kb downstream 5.0kb downstream 5000 false A03: 6928922-6933921 Brassica rapa FPsc
Brara.C01444 10.0kb upstream 10.0kb upstream 12008 true A03: 6933922-6945929 Brassica rapa FPsc
Brara.C01444 10.0kb upstream 10.0kb upstream 10000 false A03: 6935930-6945929 Brassica rapa FPsc
Brara.C01444 10.0kb downstream 10.0kb downstream 12008 true A03: 6923922-6935929 Brassica rapa FPsc
Brara.C01444 10.0kb downstream 10.0kb downstream 10000 false A03: 6923922-6933921 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369793 5261 Brassicaceae View MSA
123835004 5264 Brassicales-Malvales View MSA
124342546 5266 SBM View MSA
124237617 5268 Malvidae View MSA
124065069 5270 Rosid View MSA
123739710 5271 Pentapetalae View MSA
122786759 5272 Eudicot View MSA
122042958 5273 Angiosperm View MSA
121344567 5274 Embryophyte View MSA
123380066 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier