Gene : Brara.J00839 B. rapa FPsc v1.3
Defline:  (1 of 5) PTHR31707:SF8 - PECTINESTERASE/PECTINESTERASE INHIBITOR 34-RELATED Genomic Order:  839
Name:  ? Brara.J00839 Secondary Identifier:  ? PAC:30612325
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-1081 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.J00839 0.5kb upstream 0.5kb upstream 2524 true A10: 8385999-8388522 Brassica rapa FPsc
Brara.J00839 0.5kb upstream 0.5kb upstream 500 false A10: 8388023-8388522 Brassica rapa FPsc
Brara.J00839 0.5kb downstream 0.5kb downstream 2524 true A10: 8385499-8388022 Brassica rapa FPsc
Brara.J00839 0.5kb downstream 0.5kb downstream 500 false A10: 8385499-8385998 Brassica rapa FPsc
Brara.J00839 1.0kb upstream 1.0kb upstream 3024 true A10: 8385999-8389022 Brassica rapa FPsc
Brara.J00839 1.0kb upstream 1.0kb upstream 1000 false A10: 8388023-8389022 Brassica rapa FPsc
Brara.J00839 1.0kb downstream 1.0kb downstream 3024 true A10: 8384999-8388022 Brassica rapa FPsc
Brara.J00839 1.0kb downstream 1.0kb downstream 1000 false A10: 8384999-8385998 Brassica rapa FPsc
Brara.J00839 2.0kb upstream 2.0kb upstream 4024 true A10: 8385999-8390022 Brassica rapa FPsc
Brara.J00839 2.0kb upstream 2.0kb upstream 2000 false A10: 8388023-8390022 Brassica rapa FPsc
Brara.J00839 2.0kb downstream 2.0kb downstream 4024 true A10: 8383999-8388022 Brassica rapa FPsc
Brara.J00839 2.0kb downstream 2.0kb downstream 2000 false A10: 8383999-8385998 Brassica rapa FPsc
Brara.J00839 5.0kb upstream 5.0kb upstream 7024 true A10: 8385999-8393022 Brassica rapa FPsc
Brara.J00839 5.0kb upstream 5.0kb upstream 5000 false A10: 8388023-8393022 Brassica rapa FPsc
Brara.J00839 5.0kb downstream 5.0kb downstream 7024 true A10: 8380999-8388022 Brassica rapa FPsc
Brara.J00839 5.0kb downstream 5.0kb downstream 5000 false A10: 8380999-8385998 Brassica rapa FPsc
Brara.J00839 10.0kb upstream 10.0kb upstream 12024 true A10: 8385999-8398022 Brassica rapa FPsc
Brara.J00839 10.0kb upstream 10.0kb upstream 10000 false A10: 8388023-8398022 Brassica rapa FPsc
Brara.J00839 10.0kb downstream 10.0kb downstream 12024 true A10: 8375999-8388022 Brassica rapa FPsc
Brara.J00839 10.0kb downstream 10.0kb downstream 10000 false A10: 8375999-8385998 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377390 5261 Brassicaceae View MSA
123838000 5264 Brassicales-Malvales View MSA
124337628 5266 SBM View MSA
124239188 5268 Malvidae View MSA
124065220 5270 Rosid View MSA
123746199 5271 Pentapetalae View MSA
122794152 5272 Eudicot View MSA
122043800 5273 Angiosperm View MSA
121350573 5274 Embryophyte View MSA
123381802 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier