Gene : Brara.J00781 B. rapa FPsc v1.3
Defline:  (1 of 1) KOG4163 - Prolyl-tRNA synthetase Genomic Order:  781
Name:  ? Brara.J00781 Secondary Identifier:  ? PAC:30612358
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc TRNA-CHARGING-PWY Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.J00781 0.5kb upstream 0.5kb upstream 2323 true A10: 7614132-7616454 Brassica rapa FPsc
Brara.J00781 0.5kb upstream 0.5kb upstream 500 false A10: 7614132-7614631 Brassica rapa FPsc
Brara.J00781 0.5kb downstream 0.5kb downstream 2323 true A10: 7614632-7616954 Brassica rapa FPsc
Brara.J00781 0.5kb downstream 0.5kb downstream 500 false A10: 7616455-7616954 Brassica rapa FPsc
Brara.J00781 1.0kb upstream 1.0kb upstream 2823 true A10: 7613632-7616454 Brassica rapa FPsc
Brara.J00781 1.0kb upstream 1.0kb upstream 1000 false A10: 7613632-7614631 Brassica rapa FPsc
Brara.J00781 1.0kb downstream 1.0kb downstream 2823 true A10: 7614632-7617454 Brassica rapa FPsc
Brara.J00781 1.0kb downstream 1.0kb downstream 1000 false A10: 7616455-7617454 Brassica rapa FPsc
Brara.J00781 2.0kb upstream 2.0kb upstream 3823 true A10: 7612632-7616454 Brassica rapa FPsc
Brara.J00781 2.0kb upstream 2.0kb upstream 2000 false A10: 7612632-7614631 Brassica rapa FPsc
Brara.J00781 2.0kb downstream 2.0kb downstream 3823 true A10: 7614632-7618454 Brassica rapa FPsc
Brara.J00781 2.0kb downstream 2.0kb downstream 2000 false A10: 7616455-7618454 Brassica rapa FPsc
Brara.J00781 5.0kb upstream 5.0kb upstream 6823 true A10: 7609632-7616454 Brassica rapa FPsc
Brara.J00781 5.0kb upstream 5.0kb upstream 5000 false A10: 7609632-7614631 Brassica rapa FPsc
Brara.J00781 5.0kb downstream 5.0kb downstream 6823 true A10: 7614632-7621454 Brassica rapa FPsc
Brara.J00781 5.0kb downstream 5.0kb downstream 5000 false A10: 7616455-7621454 Brassica rapa FPsc
Brara.J00781 10.0kb upstream 10.0kb upstream 11823 true A10: 7604632-7616454 Brassica rapa FPsc
Brara.J00781 10.0kb upstream 10.0kb upstream 10000 false A10: 7604632-7614631 Brassica rapa FPsc
Brara.J00781 10.0kb downstream 10.0kb downstream 11823 true A10: 7614632-7626454 Brassica rapa FPsc
Brara.J00781 10.0kb downstream 10.0kb downstream 10000 false A10: 7616455-7626454 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122346165 5261 Brassicaceae Singleton cluster - no MSA
123785896 5264 Brassicales-Malvales Singleton cluster - no MSA
124284021 5266 SBM Singleton cluster - no MSA
124138317 5268 Malvidae Singleton cluster - no MSA
124041821 5270 Rosid View MSA
123755028 5271 Pentapetalae View MSA
122798313 5272 Eudicot View MSA
122044069 5273 Angiosperm View MSA
121345199 5274 Embryophyte View MSA
123428629 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier