Gene : Brara.C01372 B. rapa FPsc v1.3
Defline:  (1 of 6) PTHR11926:SF326 - ANTHOCYANIDIN 3-O-GLUCOSIDE 2'''-O-XYLOSYLTRANSFERASE-RELATED Genomic Order:  1372
Name:  ? Brara.C01372 Secondary Identifier:  ? PAC:30615680
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-7678 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.C01372 0.5kb upstream 0.5kb upstream 1853 true A03: 6461805-6463657 Brassica rapa FPsc
Brara.C01372 0.5kb upstream 0.5kb upstream 500 false A03: 6461805-6462304 Brassica rapa FPsc
Brara.C01372 0.5kb downstream 0.5kb downstream 1853 true A03: 6462305-6464157 Brassica rapa FPsc
Brara.C01372 0.5kb downstream 0.5kb downstream 500 false A03: 6463658-6464157 Brassica rapa FPsc
Brara.C01372 1.0kb upstream 1.0kb upstream 2353 true A03: 6461305-6463657 Brassica rapa FPsc
Brara.C01372 1.0kb upstream 1.0kb upstream 1000 false A03: 6461305-6462304 Brassica rapa FPsc
Brara.C01372 1.0kb downstream 1.0kb downstream 2353 true A03: 6462305-6464657 Brassica rapa FPsc
Brara.C01372 1.0kb downstream 1.0kb downstream 1000 false A03: 6463658-6464657 Brassica rapa FPsc
Brara.C01372 2.0kb upstream 2.0kb upstream 3353 true A03: 6460305-6463657 Brassica rapa FPsc
Brara.C01372 2.0kb upstream 2.0kb upstream 2000 false A03: 6460305-6462304 Brassica rapa FPsc
Brara.C01372 2.0kb downstream 2.0kb downstream 3353 true A03: 6462305-6465657 Brassica rapa FPsc
Brara.C01372 2.0kb downstream 2.0kb downstream 2000 false A03: 6463658-6465657 Brassica rapa FPsc
Brara.C01372 5.0kb upstream 5.0kb upstream 6353 true A03: 6457305-6463657 Brassica rapa FPsc
Brara.C01372 5.0kb upstream 5.0kb upstream 5000 false A03: 6457305-6462304 Brassica rapa FPsc
Brara.C01372 5.0kb downstream 5.0kb downstream 6353 true A03: 6462305-6468657 Brassica rapa FPsc
Brara.C01372 5.0kb downstream 5.0kb downstream 5000 false A03: 6463658-6468657 Brassica rapa FPsc
Brara.C01372 10.0kb upstream 10.0kb upstream 11353 true A03: 6452305-6463657 Brassica rapa FPsc
Brara.C01372 10.0kb upstream 10.0kb upstream 10000 false A03: 6452305-6462304 Brassica rapa FPsc
Brara.C01372 10.0kb downstream 10.0kb downstream 11353 true A03: 6462305-6473657 Brassica rapa FPsc
Brara.C01372 10.0kb downstream 10.0kb downstream 10000 false A03: 6463658-6473657 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379165 5261 Brassicaceae View MSA
123839739 5264 Brassicales-Malvales View MSA
124346901 5266 SBM View MSA
124241012 5268 Malvidae View MSA
124064648 5270 Rosid View MSA
123753607 5271 Pentapetalae View MSA
122797779 5272 Eudicot View MSA
122051696 5273 Angiosperm View MSA
121351097 5274 Embryophyte View MSA
123428681 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier