Gene : Brara.J00643 B. rapa FPsc v1.3
Defline:  (1 of 2) PTHR31423:SF3 - PROLYL-TRNA SYNTHETASE ASSOCIATED DOMAIN-CONTAINING PROTEIN 1-RELATED Genomic Order:  643
Name:  ? Brara.J00643 Secondary Identifier:  ? PAC:30612205
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc TRNA-CHARGING-PWY Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.J00643 0.5kb upstream 0.5kb upstream 2794 true A10: 5368117-5370910 Brassica rapa FPsc
Brara.J00643 0.5kb upstream 0.5kb upstream 500 false A10: 5368117-5368616 Brassica rapa FPsc
Brara.J00643 0.5kb downstream 0.5kb downstream 2794 true A10: 5368617-5371410 Brassica rapa FPsc
Brara.J00643 0.5kb downstream 0.5kb downstream 500 false A10: 5370911-5371410 Brassica rapa FPsc
Brara.J00643 1.0kb upstream 1.0kb upstream 3294 true A10: 5367617-5370910 Brassica rapa FPsc
Brara.J00643 1.0kb upstream 1.0kb upstream 1000 false A10: 5367617-5368616 Brassica rapa FPsc
Brara.J00643 1.0kb downstream 1.0kb downstream 3294 true A10: 5368617-5371910 Brassica rapa FPsc
Brara.J00643 1.0kb downstream 1.0kb downstream 1000 false A10: 5370911-5371910 Brassica rapa FPsc
Brara.J00643 2.0kb upstream 2.0kb upstream 4294 true A10: 5366617-5370910 Brassica rapa FPsc
Brara.J00643 2.0kb upstream 2.0kb upstream 2000 false A10: 5366617-5368616 Brassica rapa FPsc
Brara.J00643 2.0kb downstream 2.0kb downstream 4294 true A10: 5368617-5372910 Brassica rapa FPsc
Brara.J00643 2.0kb downstream 2.0kb downstream 2000 false A10: 5370911-5372910 Brassica rapa FPsc
Brara.J00643 5.0kb upstream 5.0kb upstream 7294 true A10: 5363617-5370910 Brassica rapa FPsc
Brara.J00643 5.0kb upstream 5.0kb upstream 5000 false A10: 5363617-5368616 Brassica rapa FPsc
Brara.J00643 5.0kb downstream 5.0kb downstream 7294 true A10: 5368617-5375910 Brassica rapa FPsc
Brara.J00643 5.0kb downstream 5.0kb downstream 5000 false A10: 5370911-5375910 Brassica rapa FPsc
Brara.J00643 10.0kb upstream 10.0kb upstream 12294 true A10: 5358617-5370910 Brassica rapa FPsc
Brara.J00643 10.0kb upstream 10.0kb upstream 10000 false A10: 5358617-5368616 Brassica rapa FPsc
Brara.J00643 10.0kb downstream 10.0kb downstream 12294 true A10: 5368617-5380910 Brassica rapa FPsc
Brara.J00643 10.0kb downstream 10.0kb downstream 10000 false A10: 5370911-5380910 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367335 5261 Brassicaceae View MSA
123836180 5264 Brassicales-Malvales View MSA
124337596 5266 SBM View MSA
124237844 5268 Malvidae View MSA
124062922 5270 Rosid View MSA
123736377 5271 Pentapetalae View MSA
122789736 5272 Eudicot View MSA
122045268 5273 Angiosperm View MSA
121348045 5274 Embryophyte View MSA
123425543 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier