Gene : Brara.C01211 B. rapa FPsc v1.3
Defline:  (1 of 2) PTHR13789:SF207 - LYCOPENE EPSILON CYCLASE, CHLOROPLASTIC Genomic Order:  1211
Name:  ? Brara.C01211 Secondary Identifier:  ? PAC:30617080
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc CAROTENOID-PWY Brassica rapa FPsc pathologic  
BrapaFPsc PWY-5175 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-5946 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.C01211 0.5kb upstream 0.5kb upstream 3410 true A03: 5628030-5631439 Brassica rapa FPsc
Brara.C01211 0.5kb upstream 0.5kb upstream 500 false A03: 5630940-5631439 Brassica rapa FPsc
Brara.C01211 0.5kb downstream 0.5kb downstream 3410 true A03: 5627530-5630939 Brassica rapa FPsc
Brara.C01211 0.5kb downstream 0.5kb downstream 500 false A03: 5627530-5628029 Brassica rapa FPsc
Brara.C01211 1.0kb upstream 1.0kb upstream 3910 true A03: 5628030-5631939 Brassica rapa FPsc
Brara.C01211 1.0kb upstream 1.0kb upstream 1000 false A03: 5630940-5631939 Brassica rapa FPsc
Brara.C01211 1.0kb downstream 1.0kb downstream 3910 true A03: 5627030-5630939 Brassica rapa FPsc
Brara.C01211 1.0kb downstream 1.0kb downstream 1000 false A03: 5627030-5628029 Brassica rapa FPsc
Brara.C01211 2.0kb upstream 2.0kb upstream 4910 true A03: 5628030-5632939 Brassica rapa FPsc
Brara.C01211 2.0kb upstream 2.0kb upstream 2000 false A03: 5630940-5632939 Brassica rapa FPsc
Brara.C01211 2.0kb downstream 2.0kb downstream 4910 true A03: 5626030-5630939 Brassica rapa FPsc
Brara.C01211 2.0kb downstream 2.0kb downstream 2000 false A03: 5626030-5628029 Brassica rapa FPsc
Brara.C01211 5.0kb upstream 5.0kb upstream 7910 true A03: 5628030-5635939 Brassica rapa FPsc
Brara.C01211 5.0kb upstream 5.0kb upstream 5000 false A03: 5630940-5635939 Brassica rapa FPsc
Brara.C01211 5.0kb downstream 5.0kb downstream 7910 true A03: 5623030-5630939 Brassica rapa FPsc
Brara.C01211 5.0kb downstream 5.0kb downstream 5000 false A03: 5623030-5628029 Brassica rapa FPsc
Brara.C01211 10.0kb upstream 10.0kb upstream 12910 true A03: 5628030-5640939 Brassica rapa FPsc
Brara.C01211 10.0kb upstream 10.0kb upstream 10000 false A03: 5630940-5640939 Brassica rapa FPsc
Brara.C01211 10.0kb downstream 10.0kb downstream 12910 true A03: 5618030-5630939 Brassica rapa FPsc
Brara.C01211 10.0kb downstream 10.0kb downstream 10000 false A03: 5618030-5628029 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379674 5261 Brassicaceae View MSA
123834922 5264 Brassicales-Malvales View MSA
124342530 5266 SBM View MSA
124243060 5268 Malvidae View MSA
124068333 5270 Rosid View MSA
123739919 5271 Pentapetalae View MSA
122791667 5272 Eudicot View MSA
122041543 5273 Angiosperm View MSA
121345455 5274 Embryophyte View MSA
123424108 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier