Gene : Brara.C01236 B. rapa FPsc v1.3
Defline:  (1 of 2) PTHR23416:SF2 - SERINE ACETYLTRANSFERASE 5 Genomic Order:  1236
Name:  ? Brara.C01236 Secondary Identifier:  ? PAC:30615656
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc CYSTSYN-PWY Brassica rapa FPsc pathologic  
BrapaFPsc PWY-6936 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.C01236 0.5kb upstream 0.5kb upstream 2107 true A03: 5768774-5770880 Brassica rapa FPsc
Brara.C01236 0.5kb upstream 0.5kb upstream 500 false A03: 5770381-5770880 Brassica rapa FPsc
Brara.C01236 0.5kb downstream 0.5kb downstream 2107 true A03: 5768274-5770380 Brassica rapa FPsc
Brara.C01236 0.5kb downstream 0.5kb downstream 500 false A03: 5768274-5768773 Brassica rapa FPsc
Brara.C01236 1.0kb upstream 1.0kb upstream 2607 true A03: 5768774-5771380 Brassica rapa FPsc
Brara.C01236 1.0kb upstream 1.0kb upstream 1000 false A03: 5770381-5771380 Brassica rapa FPsc
Brara.C01236 1.0kb downstream 1.0kb downstream 2607 true A03: 5767774-5770380 Brassica rapa FPsc
Brara.C01236 1.0kb downstream 1.0kb downstream 1000 false A03: 5767774-5768773 Brassica rapa FPsc
Brara.C01236 2.0kb upstream 2.0kb upstream 3607 true A03: 5768774-5772380 Brassica rapa FPsc
Brara.C01236 2.0kb upstream 2.0kb upstream 2000 false A03: 5770381-5772380 Brassica rapa FPsc
Brara.C01236 2.0kb downstream 2.0kb downstream 3607 true A03: 5766774-5770380 Brassica rapa FPsc
Brara.C01236 2.0kb downstream 2.0kb downstream 2000 false A03: 5766774-5768773 Brassica rapa FPsc
Brara.C01236 5.0kb upstream 5.0kb upstream 6607 true A03: 5768774-5775380 Brassica rapa FPsc
Brara.C01236 5.0kb upstream 5.0kb upstream 5000 false A03: 5770381-5775380 Brassica rapa FPsc
Brara.C01236 5.0kb downstream 5.0kb downstream 6607 true A03: 5763774-5770380 Brassica rapa FPsc
Brara.C01236 5.0kb downstream 5.0kb downstream 5000 false A03: 5763774-5768773 Brassica rapa FPsc
Brara.C01236 10.0kb upstream 10.0kb upstream 11607 true A03: 5768774-5780380 Brassica rapa FPsc
Brara.C01236 10.0kb upstream 10.0kb upstream 10000 false A03: 5770381-5780380 Brassica rapa FPsc
Brara.C01236 10.0kb downstream 10.0kb downstream 11607 true A03: 5758774-5770380 Brassica rapa FPsc
Brara.C01236 10.0kb downstream 10.0kb downstream 10000 false A03: 5758774-5768773 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368813 5261 Brassicaceae View MSA
123828462 5264 Brassicales-Malvales View MSA
124338589 5266 SBM View MSA
124250792 5268 Malvidae View MSA
124068098 5270 Rosid View MSA
123738273 5271 Pentapetalae View MSA
122789751 5272 Eudicot View MSA
122047158 5273 Angiosperm View MSA
121348374 5274 Embryophyte View MSA
123426625 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier