Gene : Brara.C01232 B. rapa FPsc v1.3
Defline:  (1 of 2) PTHR22594:SF34 - ASPARAGINE--TRNA LIGASE, MITOCHONDRIAL-RELATED Genomic Order:  1232
Name:  ? Brara.C01232 Secondary Identifier:  ? PAC:30615673
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc TRNA-CHARGING-PWY Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.C01232 0.5kb upstream 0.5kb upstream 4540 true A03: 5754752-5759291 Brassica rapa FPsc
Brara.C01232 0.5kb upstream 0.5kb upstream 500 false A03: 5754752-5755251 Brassica rapa FPsc
Brara.C01232 0.5kb downstream 0.5kb downstream 4540 true A03: 5755252-5759791 Brassica rapa FPsc
Brara.C01232 0.5kb downstream 0.5kb downstream 500 false A03: 5759292-5759791 Brassica rapa FPsc
Brara.C01232 1.0kb upstream 1.0kb upstream 5040 true A03: 5754252-5759291 Brassica rapa FPsc
Brara.C01232 1.0kb upstream 1.0kb upstream 1000 false A03: 5754252-5755251 Brassica rapa FPsc
Brara.C01232 1.0kb downstream 1.0kb downstream 5040 true A03: 5755252-5760291 Brassica rapa FPsc
Brara.C01232 1.0kb downstream 1.0kb downstream 1000 false A03: 5759292-5760291 Brassica rapa FPsc
Brara.C01232 2.0kb upstream 2.0kb upstream 6040 true A03: 5753252-5759291 Brassica rapa FPsc
Brara.C01232 2.0kb upstream 2.0kb upstream 2000 false A03: 5753252-5755251 Brassica rapa FPsc
Brara.C01232 2.0kb downstream 2.0kb downstream 6040 true A03: 5755252-5761291 Brassica rapa FPsc
Brara.C01232 2.0kb downstream 2.0kb downstream 2000 false A03: 5759292-5761291 Brassica rapa FPsc
Brara.C01232 5.0kb upstream 5.0kb upstream 9040 true A03: 5750252-5759291 Brassica rapa FPsc
Brara.C01232 5.0kb upstream 5.0kb upstream 5000 false A03: 5750252-5755251 Brassica rapa FPsc
Brara.C01232 5.0kb downstream 5.0kb downstream 9040 true A03: 5755252-5764291 Brassica rapa FPsc
Brara.C01232 5.0kb downstream 5.0kb downstream 5000 false A03: 5759292-5764291 Brassica rapa FPsc
Brara.C01232 10.0kb upstream 10.0kb upstream 14040 true A03: 5745252-5759291 Brassica rapa FPsc
Brara.C01232 10.0kb upstream 10.0kb upstream 10000 false A03: 5745252-5755251 Brassica rapa FPsc
Brara.C01232 10.0kb downstream 10.0kb downstream 14040 true A03: 5755252-5769291 Brassica rapa FPsc
Brara.C01232 10.0kb downstream 10.0kb downstream 10000 false A03: 5759292-5769291 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362988 5261 Brassicaceae View MSA
123829828 5264 Brassicales-Malvales View MSA
124344559 5266 SBM View MSA
124246286 5268 Malvidae View MSA
124074798 5270 Rosid View MSA
123738885 5271 Pentapetalae View MSA
122790023 5272 Eudicot View MSA
122045893 5273 Angiosperm View MSA
121347200 5274 Embryophyte View MSA
123425101 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier