Gene : Brara.C01228 B. rapa FPsc v1.3
Defline:  (1 of 6) PTHR13697:SF7 - 6-PHOSPHOFRUCTOKINASE 1-RELATED Genomic Order:  1228
Name:  ? Brara.C01228 Secondary Identifier:  ? PAC:30617794
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc ANAEROFRUCAT-PWY Brassica rapa FPsc pathologic  
BrapaFPsc ANAGLYCOLYSIS-PWY Brassica rapa FPsc pathologic  
BrapaFPsc PWY-1042 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-5464 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.C01228 0.5kb upstream 0.5kb upstream 3273 true A03: 5744756-5748028 Brassica rapa FPsc
Brara.C01228 0.5kb upstream 0.5kb upstream 500 false A03: 5744756-5745255 Brassica rapa FPsc
Brara.C01228 0.5kb downstream 0.5kb downstream 3273 true A03: 5745256-5748528 Brassica rapa FPsc
Brara.C01228 0.5kb downstream 0.5kb downstream 500 false A03: 5748029-5748528 Brassica rapa FPsc
Brara.C01228 1.0kb upstream 1.0kb upstream 3773 true A03: 5744256-5748028 Brassica rapa FPsc
Brara.C01228 1.0kb upstream 1.0kb upstream 1000 false A03: 5744256-5745255 Brassica rapa FPsc
Brara.C01228 1.0kb downstream 1.0kb downstream 3773 true A03: 5745256-5749028 Brassica rapa FPsc
Brara.C01228 1.0kb downstream 1.0kb downstream 1000 false A03: 5748029-5749028 Brassica rapa FPsc
Brara.C01228 2.0kb upstream 2.0kb upstream 4773 true A03: 5743256-5748028 Brassica rapa FPsc
Brara.C01228 2.0kb upstream 2.0kb upstream 2000 false A03: 5743256-5745255 Brassica rapa FPsc
Brara.C01228 2.0kb downstream 2.0kb downstream 4773 true A03: 5745256-5750028 Brassica rapa FPsc
Brara.C01228 2.0kb downstream 2.0kb downstream 2000 false A03: 5748029-5750028 Brassica rapa FPsc
Brara.C01228 5.0kb upstream 5.0kb upstream 7773 true A03: 5740256-5748028 Brassica rapa FPsc
Brara.C01228 5.0kb upstream 5.0kb upstream 5000 false A03: 5740256-5745255 Brassica rapa FPsc
Brara.C01228 5.0kb downstream 5.0kb downstream 7773 true A03: 5745256-5753028 Brassica rapa FPsc
Brara.C01228 5.0kb downstream 5.0kb downstream 5000 false A03: 5748029-5753028 Brassica rapa FPsc
Brara.C01228 10.0kb upstream 10.0kb upstream 12773 true A03: 5735256-5748028 Brassica rapa FPsc
Brara.C01228 10.0kb upstream 10.0kb upstream 10000 false A03: 5735256-5745255 Brassica rapa FPsc
Brara.C01228 10.0kb downstream 10.0kb downstream 12773 true A03: 5745256-5758028 Brassica rapa FPsc
Brara.C01228 10.0kb downstream 10.0kb downstream 10000 false A03: 5748029-5758028 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041124 5273 Angiosperm View MSA
122347598 5261 Brassicaceae Singleton cluster - no MSA
123842781 5264 Brassicales-Malvales View MSA
124349329 5266 SBM View MSA
124246990 5268 Malvidae View MSA
124069245 5270 Rosid View MSA
123747020 5271 Pentapetalae View MSA
122788773 5272 Eudicot View MSA
121349898 5274 Embryophyte View MSA
123428795 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier