Gene : Brara.J02031 B. rapa FPsc v1.3
Defline:  (1 of 1) PTHR10742:SF229 - PROTOPORPHYRINOGEN OXIDASE 2, CHLOROPLASTIC/MITOCHONDRIAL Genomic Order:  2031
Name:  ? Brara.J02031 Secondary Identifier:  ? PAC:30613706
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc CHLOROPHYLL-SYN Brassica rapa FPsc pathologic  
BrapaFPsc HEME-BIOSYNTHESIS-II Brassica rapa FPsc pathologic  
BrapaFPsc PWY-5918 Brassica rapa FPsc pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.J02031 0.5kb upstream 0.5kb upstream 4484 true A10: 15884346-15888829 Brassica rapa FPsc
Brara.J02031 0.5kb upstream 0.5kb upstream 500 false A10: 15884346-15884845 Brassica rapa FPsc
Brara.J02031 0.5kb downstream 0.5kb downstream 4484 true A10: 15884846-15889329 Brassica rapa FPsc
Brara.J02031 0.5kb downstream 0.5kb downstream 500 false A10: 15888830-15889329 Brassica rapa FPsc
Brara.J02031 1.0kb upstream 1.0kb upstream 4984 true A10: 15883846-15888829 Brassica rapa FPsc
Brara.J02031 1.0kb upstream 1.0kb upstream 1000 false A10: 15883846-15884845 Brassica rapa FPsc
Brara.J02031 1.0kb downstream 1.0kb downstream 4984 true A10: 15884846-15889829 Brassica rapa FPsc
Brara.J02031 1.0kb downstream 1.0kb downstream 1000 false A10: 15888830-15889829 Brassica rapa FPsc
Brara.J02031 2.0kb upstream 2.0kb upstream 5984 true A10: 15882846-15888829 Brassica rapa FPsc
Brara.J02031 2.0kb upstream 2.0kb upstream 2000 false A10: 15882846-15884845 Brassica rapa FPsc
Brara.J02031 2.0kb downstream 2.0kb downstream 5984 true A10: 15884846-15890829 Brassica rapa FPsc
Brara.J02031 2.0kb downstream 2.0kb downstream 2000 false A10: 15888830-15890829 Brassica rapa FPsc
Brara.J02031 5.0kb upstream 5.0kb upstream 8984 true A10: 15879846-15888829 Brassica rapa FPsc
Brara.J02031 5.0kb upstream 5.0kb upstream 5000 false A10: 15879846-15884845 Brassica rapa FPsc
Brara.J02031 5.0kb downstream 5.0kb downstream 8984 true A10: 15884846-15893829 Brassica rapa FPsc
Brara.J02031 5.0kb downstream 5.0kb downstream 5000 false A10: 15888830-15893829 Brassica rapa FPsc
Brara.J02031 10.0kb upstream 10.0kb upstream 13984 true A10: 15874846-15888829 Brassica rapa FPsc
Brara.J02031 10.0kb upstream 10.0kb upstream 10000 false A10: 15874846-15884845 Brassica rapa FPsc
Brara.J02031 10.0kb downstream 10.0kb downstream 13984 true A10: 15884846-15898829 Brassica rapa FPsc
Brara.J02031 10.0kb downstream 10.0kb downstream 10000 false A10: 15888830-15898829 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377658 5261 Brassicaceae View MSA
123829368 5264 Brassicales-Malvales View MSA
124344124 5266 SBM View MSA
124241673 5268 Malvidae View MSA
124068806 5270 Rosid View MSA
123747490 5271 Pentapetalae View MSA
122787686 5272 Eudicot View MSA
122041725 5273 Angiosperm View MSA
121347394 5274 Embryophyte View MSA
123424000 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier