Gene : Brara.J02009 B. rapa FPsc v1.3
Defline:  (1 of 1) 2.1.1.220 - tRNA (adenine(58)-N(1))-methyltransferase / tRNA m(1)A(58) methyltransferase Genomic Order:  2009
Name:  ? Brara.J02009 Secondary Identifier:  ? PAC:30613925
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-6829 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.J02009 0.5kb upstream 0.5kb upstream 2100 true A10: 15790556-15792655 Brassica rapa FPsc
Brara.J02009 0.5kb upstream 0.5kb upstream 500 false A10: 15792156-15792655 Brassica rapa FPsc
Brara.J02009 0.5kb downstream 0.5kb downstream 2100 true A10: 15790056-15792155 Brassica rapa FPsc
Brara.J02009 0.5kb downstream 0.5kb downstream 500 false A10: 15790056-15790555 Brassica rapa FPsc
Brara.J02009 1.0kb upstream 1.0kb upstream 2600 true A10: 15790556-15793155 Brassica rapa FPsc
Brara.J02009 1.0kb upstream 1.0kb upstream 1000 false A10: 15792156-15793155 Brassica rapa FPsc
Brara.J02009 1.0kb downstream 1.0kb downstream 2600 true A10: 15789556-15792155 Brassica rapa FPsc
Brara.J02009 1.0kb downstream 1.0kb downstream 1000 false A10: 15789556-15790555 Brassica rapa FPsc
Brara.J02009 2.0kb upstream 2.0kb upstream 3600 true A10: 15790556-15794155 Brassica rapa FPsc
Brara.J02009 2.0kb upstream 2.0kb upstream 2000 false A10: 15792156-15794155 Brassica rapa FPsc
Brara.J02009 2.0kb downstream 2.0kb downstream 3600 true A10: 15788556-15792155 Brassica rapa FPsc
Brara.J02009 2.0kb downstream 2.0kb downstream 2000 false A10: 15788556-15790555 Brassica rapa FPsc
Brara.J02009 5.0kb upstream 5.0kb upstream 6600 true A10: 15790556-15797155 Brassica rapa FPsc
Brara.J02009 5.0kb upstream 5.0kb upstream 5000 false A10: 15792156-15797155 Brassica rapa FPsc
Brara.J02009 5.0kb downstream 5.0kb downstream 6600 true A10: 15785556-15792155 Brassica rapa FPsc
Brara.J02009 5.0kb downstream 5.0kb downstream 5000 false A10: 15785556-15790555 Brassica rapa FPsc
Brara.J02009 10.0kb upstream 10.0kb upstream 11600 true A10: 15790556-15802155 Brassica rapa FPsc
Brara.J02009 10.0kb upstream 10.0kb upstream 10000 false A10: 15792156-15802155 Brassica rapa FPsc
Brara.J02009 10.0kb downstream 10.0kb downstream 11600 true A10: 15780556-15792155 Brassica rapa FPsc
Brara.J02009 10.0kb downstream 10.0kb downstream 10000 false A10: 15780556-15790555 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365982 5261 Brassicaceae View MSA
123833915 5264 Brassicales-Malvales View MSA
124342887 5266 SBM View MSA
124239555 5268 Malvidae View MSA
124067339 5270 Rosid View MSA
123740177 5271 Pentapetalae View MSA
122793445 5272 Eudicot View MSA
122045272 5273 Angiosperm View MSA
121345508 5274 Embryophyte View MSA
123423922 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier