Gene : Brara.J01706 B. rapa FPsc v1.3
Defline:  (1 of 3) PTHR21319//PTHR21319:SF5 - RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 Genomic Order:  1706
Name:  ? Brara.J01706 Secondary Identifier:  ? PAC:30613240
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-7511 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.J01706 0.5kb upstream 0.5kb upstream 3230 true A10: 14321624-14324853 Brassica rapa FPsc
Brara.J01706 0.5kb upstream 0.5kb upstream 500 false A10: 14324354-14324853 Brassica rapa FPsc
Brara.J01706 0.5kb downstream 0.5kb downstream 3230 true A10: 14321124-14324353 Brassica rapa FPsc
Brara.J01706 0.5kb downstream 0.5kb downstream 500 false A10: 14321124-14321623 Brassica rapa FPsc
Brara.J01706 1.0kb upstream 1.0kb upstream 3730 true A10: 14321624-14325353 Brassica rapa FPsc
Brara.J01706 1.0kb upstream 1.0kb upstream 1000 false A10: 14324354-14325353 Brassica rapa FPsc
Brara.J01706 1.0kb downstream 1.0kb downstream 3730 true A10: 14320624-14324353 Brassica rapa FPsc
Brara.J01706 1.0kb downstream 1.0kb downstream 1000 false A10: 14320624-14321623 Brassica rapa FPsc
Brara.J01706 2.0kb upstream 2.0kb upstream 4730 true A10: 14321624-14326353 Brassica rapa FPsc
Brara.J01706 2.0kb upstream 2.0kb upstream 2000 false A10: 14324354-14326353 Brassica rapa FPsc
Brara.J01706 2.0kb downstream 2.0kb downstream 4730 true A10: 14319624-14324353 Brassica rapa FPsc
Brara.J01706 2.0kb downstream 2.0kb downstream 2000 false A10: 14319624-14321623 Brassica rapa FPsc
Brara.J01706 5.0kb upstream 5.0kb upstream 7730 true A10: 14321624-14329353 Brassica rapa FPsc
Brara.J01706 5.0kb upstream 5.0kb upstream 5000 false A10: 14324354-14329353 Brassica rapa FPsc
Brara.J01706 5.0kb downstream 5.0kb downstream 7730 true A10: 14316624-14324353 Brassica rapa FPsc
Brara.J01706 5.0kb downstream 5.0kb downstream 5000 false A10: 14316624-14321623 Brassica rapa FPsc
Brara.J01706 10.0kb upstream 10.0kb upstream 12730 true A10: 14321624-14334353 Brassica rapa FPsc
Brara.J01706 10.0kb upstream 10.0kb upstream 10000 false A10: 14324354-14334353 Brassica rapa FPsc
Brara.J01706 10.0kb downstream 10.0kb downstream 12730 true A10: 14311624-14324353 Brassica rapa FPsc
Brara.J01706 10.0kb downstream 10.0kb downstream 10000 false A10: 14311624-14321623 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122346353 5261 Brassicaceae Singleton cluster - no MSA
123786050 5264 Brassicales-Malvales Singleton cluster - no MSA
124284171 5266 SBM Singleton cluster - no MSA
124256176 5268 Malvidae View MSA
124067904 5270 Rosid View MSA
123739632 5271 Pentapetalae View MSA
122785839 5272 Eudicot View MSA
122043981 5273 Angiosperm View MSA
123428990 5275 Viridiplantae View MSA
121310221 5274 Embryophyte View MSA

0 Rna Seq Expressions

1 Strain

DB identifier