Gene : Brara.J01380 B. rapa FPsc v1.3
Defline:  (1 of 2) 4.6.1.16 - tRNA-intron lyase / tRNA splicing endonuclease Genomic Order:  1380
Name:  ? Brara.J01380 Secondary Identifier:  ? PAC:30612333
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-6689 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.J01380 0.5kb upstream 0.5kb upstream 2094 true A10: 12311511-12313604 Brassica rapa FPsc
Brara.J01380 0.5kb upstream 0.5kb upstream 500 false A10: 12313105-12313604 Brassica rapa FPsc
Brara.J01380 0.5kb downstream 0.5kb downstream 2094 true A10: 12311011-12313104 Brassica rapa FPsc
Brara.J01380 0.5kb downstream 0.5kb downstream 500 false A10: 12311011-12311510 Brassica rapa FPsc
Brara.J01380 1.0kb upstream 1.0kb upstream 2594 true A10: 12311511-12314104 Brassica rapa FPsc
Brara.J01380 1.0kb upstream 1.0kb upstream 1000 false A10: 12313105-12314104 Brassica rapa FPsc
Brara.J01380 1.0kb downstream 1.0kb downstream 2594 true A10: 12310511-12313104 Brassica rapa FPsc
Brara.J01380 1.0kb downstream 1.0kb downstream 1000 false A10: 12310511-12311510 Brassica rapa FPsc
Brara.J01380 2.0kb upstream 2.0kb upstream 3594 true A10: 12311511-12315104 Brassica rapa FPsc
Brara.J01380 2.0kb upstream 2.0kb upstream 2000 false A10: 12313105-12315104 Brassica rapa FPsc
Brara.J01380 2.0kb downstream 2.0kb downstream 3594 true A10: 12309511-12313104 Brassica rapa FPsc
Brara.J01380 2.0kb downstream 2.0kb downstream 2000 false A10: 12309511-12311510 Brassica rapa FPsc
Brara.J01380 5.0kb upstream 5.0kb upstream 6594 true A10: 12311511-12318104 Brassica rapa FPsc
Brara.J01380 5.0kb upstream 5.0kb upstream 5000 false A10: 12313105-12318104 Brassica rapa FPsc
Brara.J01380 5.0kb downstream 5.0kb downstream 6594 true A10: 12306511-12313104 Brassica rapa FPsc
Brara.J01380 5.0kb downstream 5.0kb downstream 5000 false A10: 12306511-12311510 Brassica rapa FPsc
Brara.J01380 10.0kb upstream 10.0kb upstream 11594 true A10: 12311511-12323104 Brassica rapa FPsc
Brara.J01380 10.0kb upstream 10.0kb upstream 10000 false A10: 12313105-12323104 Brassica rapa FPsc
Brara.J01380 10.0kb downstream 10.0kb downstream 11594 true A10: 12301511-12313104 Brassica rapa FPsc
Brara.J01380 10.0kb downstream 10.0kb downstream 10000 false A10: 12301511-12311510 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041240 5273 Angiosperm View MSA
122373562 5261 Brassicaceae View MSA
123840604 5264 Brassicales-Malvales View MSA
124346911 5266 SBM View MSA
124240586 5268 Malvidae View MSA
124064519 5270 Rosid View MSA
123739625 5271 Pentapetalae View MSA
122788641 5272 Eudicot View MSA
123429143 5275 Viridiplantae View MSA
121344093 5274 Embryophyte View MSA

0 Rna Seq Expressions

1 Strain

DB identifier