Gene : Brara.K01553 B. rapa FPsc v1.3
Defline:  (1 of 2) 2.1.1.11 - Magnesium protoporphyrin IX methyltransferase / S-adenosylmethioninemagnesium protoporphyrin methyltransferase Genomic Order:  1
Name:  ? Brara.K01553 Secondary Identifier:  ? PAC:30627633
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc CHLOROPHYLL-SYN Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.K01553 0.5kb upstream 0.5kb upstream 1783 true Scaffold7424: 4130-5912 Brassica rapa FPsc
Brara.K01553 0.5kb upstream 0.5kb upstream 500 false Scaffold7424: 5413-5912 Brassica rapa FPsc
Brara.K01553 0.5kb downstream 0.5kb downstream 1783 true Scaffold7424: 3630-5412 Brassica rapa FPsc
Brara.K01553 0.5kb downstream 0.5kb downstream 500 false Scaffold7424: 3630-4129 Brassica rapa FPsc
Brara.K01553 1.0kb upstream 1.0kb upstream 2283 true Scaffold7424: 4130-6412 Brassica rapa FPsc
Brara.K01553 1.0kb upstream 1.0kb upstream 1000 false Scaffold7424: 5413-6412 Brassica rapa FPsc
Brara.K01553 1.0kb downstream 1.0kb downstream 2283 true Scaffold7424: 3130-5412 Brassica rapa FPsc
Brara.K01553 1.0kb downstream 1.0kb downstream 1000 false Scaffold7424: 3130-4129 Brassica rapa FPsc
Brara.K01553 2.0kb upstream 2.0kb upstream 3283 true Scaffold7424: 4130-7412 Brassica rapa FPsc
Brara.K01553 2.0kb upstream 2.0kb upstream 2000 false Scaffold7424: 5413-7412 Brassica rapa FPsc
Brara.K01553 2.0kb downstream 2.0kb downstream 3283 true Scaffold7424: 2130-5412 Brassica rapa FPsc
Brara.K01553 2.0kb downstream 2.0kb downstream 2000 false Scaffold7424: 2130-4129 Brassica rapa FPsc
Brara.K01553 5.0kb upstream 5.0kb upstream 6283 true Scaffold7424: 4130-10412 Brassica rapa FPsc
Brara.K01553 5.0kb upstream 5.0kb upstream 5000 false Scaffold7424: 5413-10412 Brassica rapa FPsc
Brara.K01553 5.0kb downstream 5.0kb downstream 5412 true Scaffold7424: 1-5412 Brassica rapa FPsc
Brara.K01553 5.0kb downstream 5.0kb downstream 4129 false Scaffold7424: 1-4129 Brassica rapa FPsc
Brara.K01553 10.0kb upstream 10.0kb upstream 11283 true Scaffold7424: 4130-15412 Brassica rapa FPsc
Brara.K01553 10.0kb upstream 10.0kb upstream 10000 false Scaffold7424: 5413-15412 Brassica rapa FPsc
Brara.K01553 10.0kb downstream 10.0kb downstream 5412 true Scaffold7424: 1-5412 Brassica rapa FPsc
Brara.K01553 10.0kb downstream 10.0kb downstream 4129 false Scaffold7424: 1-4129 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377019 5261 Brassicaceae View MSA
123828001 5264 Brassicales-Malvales View MSA
124344957 5266 SBM View MSA
124250095 5268 Malvidae View MSA
124063619 5270 Rosid View MSA
123739209 5271 Pentapetalae View MSA
122792870 5272 Eudicot View MSA
122043100 5273 Angiosperm View MSA
121345477 5274 Embryophyte View MSA
123424951 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier