Gene : Brara.E03082 B. rapa FPsc v1.3
Defline:  (1 of 5) PTHR12181:SF12 - PROTEIN LPIN-1 Genomic Order:  3082
Name:  ? Brara.E03082 Secondary Identifier:  ? PAC:30624860
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc TRIGLSYN-PWY Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.E03082 0.5kb upstream 0.5kb upstream 5004 true A05: 25506317-25511320 Brassica rapa FPsc
Brara.E03082 0.5kb upstream 0.5kb upstream 500 false A05: 25506317-25506816 Brassica rapa FPsc
Brara.E03082 0.5kb downstream 0.5kb downstream 5004 true A05: 25506817-25511820 Brassica rapa FPsc
Brara.E03082 0.5kb downstream 0.5kb downstream 500 false A05: 25511321-25511820 Brassica rapa FPsc
Brara.E03082 1.0kb upstream 1.0kb upstream 5504 true A05: 25505817-25511320 Brassica rapa FPsc
Brara.E03082 1.0kb upstream 1.0kb upstream 1000 false A05: 25505817-25506816 Brassica rapa FPsc
Brara.E03082 1.0kb downstream 1.0kb downstream 5504 true A05: 25506817-25512320 Brassica rapa FPsc
Brara.E03082 1.0kb downstream 1.0kb downstream 1000 false A05: 25511321-25512320 Brassica rapa FPsc
Brara.E03082 2.0kb upstream 2.0kb upstream 6504 true A05: 25504817-25511320 Brassica rapa FPsc
Brara.E03082 2.0kb upstream 2.0kb upstream 2000 false A05: 25504817-25506816 Brassica rapa FPsc
Brara.E03082 2.0kb downstream 2.0kb downstream 6504 true A05: 25506817-25513320 Brassica rapa FPsc
Brara.E03082 2.0kb downstream 2.0kb downstream 2000 false A05: 25511321-25513320 Brassica rapa FPsc
Brara.E03082 5.0kb upstream 5.0kb upstream 9504 true A05: 25501817-25511320 Brassica rapa FPsc
Brara.E03082 5.0kb upstream 5.0kb upstream 5000 false A05: 25501817-25506816 Brassica rapa FPsc
Brara.E03082 5.0kb downstream 5.0kb downstream 9504 true A05: 25506817-25516320 Brassica rapa FPsc
Brara.E03082 5.0kb downstream 5.0kb downstream 5000 false A05: 25511321-25516320 Brassica rapa FPsc
Brara.E03082 10.0kb upstream 10.0kb upstream 14504 true A05: 25496817-25511320 Brassica rapa FPsc
Brara.E03082 10.0kb upstream 10.0kb upstream 10000 false A05: 25496817-25506816 Brassica rapa FPsc
Brara.E03082 10.0kb downstream 10.0kb downstream 14504 true A05: 25506817-25521320 Brassica rapa FPsc
Brara.E03082 10.0kb downstream 10.0kb downstream 10000 false A05: 25511321-25521320 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366067 5261 Brassicaceae View MSA
123839656 5264 Brassicales-Malvales View MSA
124322631 5266 SBM View MSA
124248073 5268 Malvidae View MSA
124065604 5270 Rosid View MSA
123741487 5271 Pentapetalae View MSA
122792824 5272 Eudicot View MSA
122048354 5273 Angiosperm View MSA
121350822 5274 Embryophyte View MSA
123381897 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier