Gene : Brara.J02831 B. rapa FPsc v1.3
Defline:  (1 of 2) PTHR11709:SF116 - LACCASE-11 Genomic Order:  2831
Name:  ? Brara.J02831 Secondary Identifier:  ? PAC:30611888
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-5466 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.J02831 0.5kb upstream 0.5kb upstream 9469 true A10: 19418553-19428021 Brassica rapa FPsc
Brara.J02831 0.5kb upstream 0.5kb upstream 500 false A10: 19418553-19419052 Brassica rapa FPsc
Brara.J02831 0.5kb downstream 0.5kb downstream 9469 true A10: 19419053-19428521 Brassica rapa FPsc
Brara.J02831 0.5kb downstream 0.5kb downstream 500 false A10: 19428022-19428521 Brassica rapa FPsc
Brara.J02831 1.0kb upstream 1.0kb upstream 9969 true A10: 19418053-19428021 Brassica rapa FPsc
Brara.J02831 1.0kb upstream 1.0kb upstream 1000 false A10: 19418053-19419052 Brassica rapa FPsc
Brara.J02831 1.0kb downstream 1.0kb downstream 9969 true A10: 19419053-19429021 Brassica rapa FPsc
Brara.J02831 1.0kb downstream 1.0kb downstream 1000 false A10: 19428022-19429021 Brassica rapa FPsc
Brara.J02831 2.0kb upstream 2.0kb upstream 10969 true A10: 19417053-19428021 Brassica rapa FPsc
Brara.J02831 2.0kb upstream 2.0kb upstream 2000 false A10: 19417053-19419052 Brassica rapa FPsc
Brara.J02831 2.0kb downstream 2.0kb downstream 10969 true A10: 19419053-19430021 Brassica rapa FPsc
Brara.J02831 2.0kb downstream 2.0kb downstream 2000 false A10: 19428022-19430021 Brassica rapa FPsc
Brara.J02831 5.0kb upstream 5.0kb upstream 13969 true A10: 19414053-19428021 Brassica rapa FPsc
Brara.J02831 5.0kb upstream 5.0kb upstream 5000 false A10: 19414053-19419052 Brassica rapa FPsc
Brara.J02831 5.0kb downstream 5.0kb downstream 13969 true A10: 19419053-19433021 Brassica rapa FPsc
Brara.J02831 5.0kb downstream 5.0kb downstream 5000 false A10: 19428022-19433021 Brassica rapa FPsc
Brara.J02831 10.0kb upstream 10.0kb upstream 18969 true A10: 19409053-19428021 Brassica rapa FPsc
Brara.J02831 10.0kb upstream 10.0kb upstream 10000 false A10: 19409053-19419052 Brassica rapa FPsc
Brara.J02831 10.0kb downstream 10.0kb downstream 18969 true A10: 19419053-19438021 Brassica rapa FPsc
Brara.J02831 10.0kb downstream 10.0kb downstream 10000 false A10: 19428022-19438021 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122346055 5261 Brassicaceae Singleton cluster - no MSA
123785802 5264 Brassicales-Malvales Singleton cluster - no MSA
124283932 5266 SBM Singleton cluster - no MSA
124251860 5268 Malvidae View MSA
124074925 5270 Rosid View MSA
123753088 5271 Pentapetalae View MSA
122795935 5272 Eudicot View MSA
122050716 5273 Angiosperm View MSA
121350155 5274 Embryophyte View MSA
123428014 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier