Gene : Brara.E03030 B. rapa FPsc v1.3
Defline:  (1 of 1) PTHR13789:SF249 - LYCOPENE BETA CYCLASE, CHLOROPLASTIC Genomic Order:  3030
Name:  ? Brara.E03030 Secondary Identifier:  ? PAC:30624996
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc CAROTENOID-PWY Brassica rapa FPsc pathologic  
BrapaFPsc PWY-5943 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-5947 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.E03030 0.5kb upstream 0.5kb upstream 2477 true A05: 25285022-25287498 Brassica rapa FPsc
Brara.E03030 0.5kb upstream 0.5kb upstream 500 false A05: 25285022-25285521 Brassica rapa FPsc
Brara.E03030 0.5kb downstream 0.5kb downstream 2477 true A05: 25285522-25287998 Brassica rapa FPsc
Brara.E03030 0.5kb downstream 0.5kb downstream 500 false A05: 25287499-25287998 Brassica rapa FPsc
Brara.E03030 1.0kb upstream 1.0kb upstream 2977 true A05: 25284522-25287498 Brassica rapa FPsc
Brara.E03030 1.0kb upstream 1.0kb upstream 1000 false A05: 25284522-25285521 Brassica rapa FPsc
Brara.E03030 1.0kb downstream 1.0kb downstream 2977 true A05: 25285522-25288498 Brassica rapa FPsc
Brara.E03030 1.0kb downstream 1.0kb downstream 1000 false A05: 25287499-25288498 Brassica rapa FPsc
Brara.E03030 2.0kb upstream 2.0kb upstream 3977 true A05: 25283522-25287498 Brassica rapa FPsc
Brara.E03030 2.0kb upstream 2.0kb upstream 2000 false A05: 25283522-25285521 Brassica rapa FPsc
Brara.E03030 2.0kb downstream 2.0kb downstream 3977 true A05: 25285522-25289498 Brassica rapa FPsc
Brara.E03030 2.0kb downstream 2.0kb downstream 2000 false A05: 25287499-25289498 Brassica rapa FPsc
Brara.E03030 5.0kb upstream 5.0kb upstream 6977 true A05: 25280522-25287498 Brassica rapa FPsc
Brara.E03030 5.0kb upstream 5.0kb upstream 5000 false A05: 25280522-25285521 Brassica rapa FPsc
Brara.E03030 5.0kb downstream 5.0kb downstream 6977 true A05: 25285522-25292498 Brassica rapa FPsc
Brara.E03030 5.0kb downstream 5.0kb downstream 5000 false A05: 25287499-25292498 Brassica rapa FPsc
Brara.E03030 10.0kb upstream 10.0kb upstream 11977 true A05: 25275522-25287498 Brassica rapa FPsc
Brara.E03030 10.0kb upstream 10.0kb upstream 10000 false A05: 25275522-25285521 Brassica rapa FPsc
Brara.E03030 10.0kb downstream 10.0kb downstream 11977 true A05: 25285522-25297498 Brassica rapa FPsc
Brara.E03030 10.0kb downstream 10.0kb downstream 10000 false A05: 25287499-25297498 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367824 5261 Brassicaceae View MSA
123832829 5264 Brassicales-Malvales View MSA
124345045 5266 SBM View MSA
124240984 5268 Malvidae View MSA
124065821 5270 Rosid View MSA
123737595 5271 Pentapetalae View MSA
122786885 5272 Eudicot View MSA
122046204 5273 Angiosperm View MSA
121345644 5274 Embryophyte View MSA
123423874 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier