Gene : Brara.J02239 B. rapa FPsc v1.3
Defline:  (1 of 7) PTHR23023:SF37 - INDOLE-3-PYRUVATE MONOOXYGENASE YUCCA2-RELATED Genomic Order:  2239
Name:  ? Brara.J02239 Secondary Identifier:  ? PAC:30613895
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWYDQC-4 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.J02239 0.5kb upstream 0.5kb upstream 2540 true A10: 16843381-16845920 Brassica rapa FPsc
Brara.J02239 0.5kb upstream 0.5kb upstream 500 false A10: 16843381-16843880 Brassica rapa FPsc
Brara.J02239 0.5kb downstream 0.5kb downstream 2540 true A10: 16843881-16846420 Brassica rapa FPsc
Brara.J02239 0.5kb downstream 0.5kb downstream 500 false A10: 16845921-16846420 Brassica rapa FPsc
Brara.J02239 1.0kb upstream 1.0kb upstream 3040 true A10: 16842881-16845920 Brassica rapa FPsc
Brara.J02239 1.0kb upstream 1.0kb upstream 1000 false A10: 16842881-16843880 Brassica rapa FPsc
Brara.J02239 1.0kb downstream 1.0kb downstream 3040 true A10: 16843881-16846920 Brassica rapa FPsc
Brara.J02239 1.0kb downstream 1.0kb downstream 1000 false A10: 16845921-16846920 Brassica rapa FPsc
Brara.J02239 2.0kb upstream 2.0kb upstream 4040 true A10: 16841881-16845920 Brassica rapa FPsc
Brara.J02239 2.0kb upstream 2.0kb upstream 2000 false A10: 16841881-16843880 Brassica rapa FPsc
Brara.J02239 2.0kb downstream 2.0kb downstream 4040 true A10: 16843881-16847920 Brassica rapa FPsc
Brara.J02239 2.0kb downstream 2.0kb downstream 2000 false A10: 16845921-16847920 Brassica rapa FPsc
Brara.J02239 5.0kb upstream 5.0kb upstream 7040 true A10: 16838881-16845920 Brassica rapa FPsc
Brara.J02239 5.0kb upstream 5.0kb upstream 5000 false A10: 16838881-16843880 Brassica rapa FPsc
Brara.J02239 5.0kb downstream 5.0kb downstream 7040 true A10: 16843881-16850920 Brassica rapa FPsc
Brara.J02239 5.0kb downstream 5.0kb downstream 5000 false A10: 16845921-16850920 Brassica rapa FPsc
Brara.J02239 10.0kb upstream 10.0kb upstream 12040 true A10: 16833881-16845920 Brassica rapa FPsc
Brara.J02239 10.0kb upstream 10.0kb upstream 10000 false A10: 16833881-16843880 Brassica rapa FPsc
Brara.J02239 10.0kb downstream 10.0kb downstream 12040 true A10: 16843881-16855920 Brassica rapa FPsc
Brara.J02239 10.0kb downstream 10.0kb downstream 10000 false A10: 16845921-16855920 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372056 5261 Brassicaceae View MSA
123841606 5264 Brassicales-Malvales View MSA
124345129 5266 SBM View MSA
124252107 5268 Malvidae View MSA
124066807 5270 Rosid View MSA
123736759 5271 Pentapetalae View MSA
122792944 5272 Eudicot View MSA
122049474 5273 Angiosperm View MSA
121351632 5274 Embryophyte View MSA
123426700 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier