Gene : Brara.C02233 B. rapa FPsc v1.3
Defline:  (1 of 5) PTHR31375:SF2 - POLYGALACTURONASE/PECTINASE Genomic Order:  2233
Name:  ? Brara.C02233 Secondary Identifier:  ? PAC:30616549
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-1081 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.C02233 0.5kb upstream 0.5kb upstream 3070 true A03: 11227274-11230343 Brassica rapa FPsc
Brara.C02233 0.5kb upstream 0.5kb upstream 500 false A03: 11229844-11230343 Brassica rapa FPsc
Brara.C02233 0.5kb downstream 0.5kb downstream 3070 true A03: 11226774-11229843 Brassica rapa FPsc
Brara.C02233 0.5kb downstream 0.5kb downstream 500 false A03: 11226774-11227273 Brassica rapa FPsc
Brara.C02233 1.0kb upstream 1.0kb upstream 3570 true A03: 11227274-11230843 Brassica rapa FPsc
Brara.C02233 1.0kb upstream 1.0kb upstream 1000 false A03: 11229844-11230843 Brassica rapa FPsc
Brara.C02233 1.0kb downstream 1.0kb downstream 3570 true A03: 11226274-11229843 Brassica rapa FPsc
Brara.C02233 1.0kb downstream 1.0kb downstream 1000 false A03: 11226274-11227273 Brassica rapa FPsc
Brara.C02233 2.0kb upstream 2.0kb upstream 4570 true A03: 11227274-11231843 Brassica rapa FPsc
Brara.C02233 2.0kb upstream 2.0kb upstream 2000 false A03: 11229844-11231843 Brassica rapa FPsc
Brara.C02233 2.0kb downstream 2.0kb downstream 4570 true A03: 11225274-11229843 Brassica rapa FPsc
Brara.C02233 2.0kb downstream 2.0kb downstream 2000 false A03: 11225274-11227273 Brassica rapa FPsc
Brara.C02233 5.0kb upstream 5.0kb upstream 7570 true A03: 11227274-11234843 Brassica rapa FPsc
Brara.C02233 5.0kb upstream 5.0kb upstream 5000 false A03: 11229844-11234843 Brassica rapa FPsc
Brara.C02233 5.0kb downstream 5.0kb downstream 7570 true A03: 11222274-11229843 Brassica rapa FPsc
Brara.C02233 5.0kb downstream 5.0kb downstream 5000 false A03: 11222274-11227273 Brassica rapa FPsc
Brara.C02233 10.0kb upstream 10.0kb upstream 12570 true A03: 11227274-11239843 Brassica rapa FPsc
Brara.C02233 10.0kb upstream 10.0kb upstream 10000 false A03: 11229844-11239843 Brassica rapa FPsc
Brara.C02233 10.0kb downstream 10.0kb downstream 12570 true A03: 11217274-11229843 Brassica rapa FPsc
Brara.C02233 10.0kb downstream 10.0kb downstream 10000 false A03: 11217274-11227273 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366380 5261 Brassicaceae View MSA
123837359 5264 Brassicales-Malvales View MSA
124322295 5266 SBM View MSA
124252972 5268 Malvidae View MSA
124060937 5270 Rosid View MSA
123747300 5271 Pentapetalae View MSA
122794998 5272 Eudicot View MSA
122051291 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier