Gene : Brara.K01175 B. rapa FPsc v1.3
Defline:  (1 of 1) PF02992//PF13960 - Transposase family tnp2 (Transposase_21) // Domain of unknown function (DUF4218) (DUF4218) Genomic Order:  1
Name:  ? Brara.K01175 Secondary Identifier:  ? PAC:30614981
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.K01175 0.5kb upstream 0.5kb upstream 2569 true Scaffold54423: 48971-51539 Brassica rapa FPsc
Brara.K01175 0.5kb upstream 0.5kb upstream 500 false Scaffold54423: 48971-49470 Brassica rapa FPsc
Brara.K01175 0.5kb downstream 0.5kb downstream 2569 true Scaffold54423: 49471-52039 Brassica rapa FPsc
Brara.K01175 0.5kb downstream 0.5kb downstream 500 false Scaffold54423: 51540-52039 Brassica rapa FPsc
Brara.K01175 1.0kb upstream 1.0kb upstream 3069 true Scaffold54423: 48471-51539 Brassica rapa FPsc
Brara.K01175 1.0kb upstream 1.0kb upstream 1000 false Scaffold54423: 48471-49470 Brassica rapa FPsc
Brara.K01175 1.0kb downstream 1.0kb downstream 3069 true Scaffold54423: 49471-52539 Brassica rapa FPsc
Brara.K01175 1.0kb downstream 1.0kb downstream 1000 false Scaffold54423: 51540-52539 Brassica rapa FPsc
Brara.K01175 2.0kb upstream 2.0kb upstream 4069 true Scaffold54423: 47471-51539 Brassica rapa FPsc
Brara.K01175 2.0kb upstream 2.0kb upstream 2000 false Scaffold54423: 47471-49470 Brassica rapa FPsc
Brara.K01175 2.0kb downstream 2.0kb downstream 4069 true Scaffold54423: 49471-53539 Brassica rapa FPsc
Brara.K01175 2.0kb downstream 2.0kb downstream 2000 false Scaffold54423: 51540-53539 Brassica rapa FPsc
Brara.K01175 5.0kb upstream 5.0kb upstream 7069 true Scaffold54423: 44471-51539 Brassica rapa FPsc
Brara.K01175 5.0kb upstream 5.0kb upstream 5000 false Scaffold54423: 44471-49470 Brassica rapa FPsc
Brara.K01175 5.0kb downstream 5.0kb downstream 7069 true Scaffold54423: 49471-56539 Brassica rapa FPsc
Brara.K01175 5.0kb downstream 5.0kb downstream 5000 false Scaffold54423: 51540-56539 Brassica rapa FPsc
Brara.K01175 10.0kb upstream 10.0kb upstream 12069 true Scaffold54423: 39471-51539 Brassica rapa FPsc
Brara.K01175 10.0kb upstream 10.0kb upstream 10000 false Scaffold54423: 39471-49470 Brassica rapa FPsc
Brara.K01175 10.0kb downstream 10.0kb downstream 12069 true Scaffold54423: 49471-61539 Brassica rapa FPsc
Brara.K01175 10.0kb downstream 10.0kb downstream 10000 false Scaffold54423: 51540-61539 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122346814 5261 Brassicaceae Singleton cluster - no MSA
123786449 5264 Brassicales-Malvales Singleton cluster - no MSA
124284556 5266 SBM Singleton cluster - no MSA
124138748 5268 Malvidae Singleton cluster - no MSA
124039042 5270 Rosid View MSA
123751643 5271 Pentapetalae View MSA
122774113 5272 Eudicot View MSA
122048825 5273 Angiosperm View MSA
121351710 5274 Embryophyte View MSA
123427809 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier