Gene : Brara.K00821 B. rapa FPsc v1.3
Defline:  (1 of 2) PTHR12169:SF6 - LACTATION ELEVATED PROTEIN 1 Genomic Order:  7
Name:  ? Brara.K00821 Secondary Identifier:  ? PAC:30640615
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Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc ANAEROFRUCAT-PWY Brassica rapa FPsc pathologic  
BrapaFPsc ANAGLYCOLYSIS-PWY Brassica rapa FPsc pathologic  
BrapaFPsc GLUCOSE1PMETAB-PWY Brassica rapa FPsc pathologic  
BrapaFPsc PWY-621 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-7238 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.K00821 0.5kb upstream 0.5kb upstream 3089 true Scaffold31002: 38554-41642 Brassica rapa FPsc
Brara.K00821 0.5kb upstream 0.5kb upstream 500 false Scaffold31002: 38554-39053 Brassica rapa FPsc
Brara.K00821 0.5kb downstream 0.5kb downstream 3089 true Scaffold31002: 39054-42142 Brassica rapa FPsc
Brara.K00821 0.5kb downstream 0.5kb downstream 500 false Scaffold31002: 41643-42142 Brassica rapa FPsc
Brara.K00821 1.0kb upstream 1.0kb upstream 3589 true Scaffold31002: 38054-41642 Brassica rapa FPsc
Brara.K00821 1.0kb upstream 1.0kb upstream 1000 false Scaffold31002: 38054-39053 Brassica rapa FPsc
Brara.K00821 1.0kb downstream 1.0kb downstream 3589 true Scaffold31002: 39054-42642 Brassica rapa FPsc
Brara.K00821 1.0kb downstream 1.0kb downstream 1000 false Scaffold31002: 41643-42642 Brassica rapa FPsc
Brara.K00821 2.0kb upstream 2.0kb upstream 4589 true Scaffold31002: 37054-41642 Brassica rapa FPsc
Brara.K00821 2.0kb upstream 2.0kb upstream 2000 false Scaffold31002: 37054-39053 Brassica rapa FPsc
Brara.K00821 2.0kb downstream 2.0kb downstream 4589 true Scaffold31002: 39054-43642 Brassica rapa FPsc
Brara.K00821 2.0kb downstream 2.0kb downstream 2000 false Scaffold31002: 41643-43642 Brassica rapa FPsc
Brara.K00821 5.0kb upstream 5.0kb upstream 7589 true Scaffold31002: 34054-41642 Brassica rapa FPsc
Brara.K00821 5.0kb upstream 5.0kb upstream 5000 false Scaffold31002: 34054-39053 Brassica rapa FPsc
Brara.K00821 5.0kb downstream 5.0kb downstream 7589 true Scaffold31002: 39054-46642 Brassica rapa FPsc
Brara.K00821 5.0kb downstream 5.0kb downstream 5000 false Scaffold31002: 41643-46642 Brassica rapa FPsc
Brara.K00821 10.0kb upstream 10.0kb upstream 12589 true Scaffold31002: 29054-41642 Brassica rapa FPsc
Brara.K00821 10.0kb upstream 10.0kb upstream 10000 false Scaffold31002: 29054-39053 Brassica rapa FPsc
Brara.K00821 10.0kb downstream 10.0kb downstream 12589 true Scaffold31002: 39054-51642 Brassica rapa FPsc
Brara.K00821 10.0kb downstream 10.0kb downstream 10000 false Scaffold31002: 41643-51642 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370199 5261 Brassicaceae View MSA
123830240 5264 Brassicales-Malvales View MSA
124346939 5266 SBM View MSA
124240736 5268 Malvidae View MSA
124061792 5270 Rosid View MSA
123752091 5271 Pentapetalae View MSA
122793026 5272 Eudicot View MSA
122047660 5273 Angiosperm View MSA
121344773 5274 Embryophyte View MSA
123427307 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier