Gene : Brara.K00707 B. rapa FPsc v1.3
Defline:  (1 of 2) 2.5.1.39 - 4-hydroxybenzoate polyprenyltransferase / 4-hydroxybenzoate nonaprenyltransferase Genomic Order:  5
Name:  ? Brara.K00707 Secondary Identifier:  ? PAC:30614550
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-5871 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-5872 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.K00707 0.5kb upstream 0.5kb upstream 2195 true Scaffold25053: 57181-59375 Brassica rapa FPsc
Brara.K00707 0.5kb upstream 0.5kb upstream 500 false Scaffold25053: 58876-59375 Brassica rapa FPsc
Brara.K00707 0.5kb downstream 0.5kb downstream 2195 true Scaffold25053: 56681-58875 Brassica rapa FPsc
Brara.K00707 0.5kb downstream 0.5kb downstream 500 false Scaffold25053: 56681-57180 Brassica rapa FPsc
Brara.K00707 1.0kb upstream 1.0kb upstream 2695 true Scaffold25053: 57181-59875 Brassica rapa FPsc
Brara.K00707 1.0kb upstream 1.0kb upstream 1000 false Scaffold25053: 58876-59875 Brassica rapa FPsc
Brara.K00707 1.0kb downstream 1.0kb downstream 2695 true Scaffold25053: 56181-58875 Brassica rapa FPsc
Brara.K00707 1.0kb downstream 1.0kb downstream 1000 false Scaffold25053: 56181-57180 Brassica rapa FPsc
Brara.K00707 2.0kb upstream 2.0kb upstream 3695 true Scaffold25053: 57181-60875 Brassica rapa FPsc
Brara.K00707 2.0kb upstream 2.0kb upstream 2000 false Scaffold25053: 58876-60875 Brassica rapa FPsc
Brara.K00707 2.0kb downstream 2.0kb downstream 3695 true Scaffold25053: 55181-58875 Brassica rapa FPsc
Brara.K00707 2.0kb downstream 2.0kb downstream 2000 false Scaffold25053: 55181-57180 Brassica rapa FPsc
Brara.K00707 5.0kb upstream 5.0kb upstream 6695 true Scaffold25053: 57181-63875 Brassica rapa FPsc
Brara.K00707 5.0kb upstream 5.0kb upstream 5000 false Scaffold25053: 58876-63875 Brassica rapa FPsc
Brara.K00707 5.0kb downstream 5.0kb downstream 6695 true Scaffold25053: 52181-58875 Brassica rapa FPsc
Brara.K00707 5.0kb downstream 5.0kb downstream 5000 false Scaffold25053: 52181-57180 Brassica rapa FPsc
Brara.K00707 10.0kb upstream 10.0kb upstream 11695 true Scaffold25053: 57181-68875 Brassica rapa FPsc
Brara.K00707 10.0kb upstream 10.0kb upstream 10000 false Scaffold25053: 58876-68875 Brassica rapa FPsc
Brara.K00707 10.0kb downstream 10.0kb downstream 11695 true Scaffold25053: 47181-58875 Brassica rapa FPsc
Brara.K00707 10.0kb downstream 10.0kb downstream 10000 false Scaffold25053: 47181-57180 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122346652 5261 Brassicaceae Singleton cluster - no MSA
123786306 5264 Brassicales-Malvales Singleton cluster - no MSA
124284418 5266 SBM Singleton cluster - no MSA
124252362 5268 Malvidae View MSA
124066892 5270 Rosid View MSA
123737843 5271 Pentapetalae View MSA
122788354 5272 Eudicot View MSA
122042592 5273 Angiosperm View MSA
121344514 5274 Embryophyte View MSA
123428392 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier