Gene : Brara.K00732 B. rapa FPsc v1.3
Defline:  (1 of 3) PTHR13301:SF51 - CELLULOSE SYNTHASE-LIKE PROTEIN G1-RELATED Genomic Order:  30
Name:  ? Brara.K00732 Secondary Identifier:  ? PAC:30614533
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-1001 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.K00732 0.5kb upstream 0.5kb upstream 6934 true Scaffold25053: 241408-248341 Brassica rapa FPsc
Brara.K00732 0.5kb upstream 0.5kb upstream 500 false Scaffold25053: 241408-241907 Brassica rapa FPsc
Brara.K00732 0.5kb downstream 0.5kb downstream 6934 true Scaffold25053: 241908-248841 Brassica rapa FPsc
Brara.K00732 0.5kb downstream 0.5kb downstream 500 false Scaffold25053: 248342-248841 Brassica rapa FPsc
Brara.K00732 1.0kb upstream 1.0kb upstream 7434 true Scaffold25053: 240908-248341 Brassica rapa FPsc
Brara.K00732 1.0kb upstream 1.0kb upstream 1000 false Scaffold25053: 240908-241907 Brassica rapa FPsc
Brara.K00732 1.0kb downstream 1.0kb downstream 7434 true Scaffold25053: 241908-249341 Brassica rapa FPsc
Brara.K00732 1.0kb downstream 1.0kb downstream 1000 false Scaffold25053: 248342-249341 Brassica rapa FPsc
Brara.K00732 2.0kb upstream 2.0kb upstream 8434 true Scaffold25053: 239908-248341 Brassica rapa FPsc
Brara.K00732 2.0kb upstream 2.0kb upstream 2000 false Scaffold25053: 239908-241907 Brassica rapa FPsc
Brara.K00732 2.0kb downstream 2.0kb downstream 8434 true Scaffold25053: 241908-250341 Brassica rapa FPsc
Brara.K00732 2.0kb downstream 2.0kb downstream 2000 false Scaffold25053: 248342-250341 Brassica rapa FPsc
Brara.K00732 5.0kb upstream 5.0kb upstream 11434 true Scaffold25053: 236908-248341 Brassica rapa FPsc
Brara.K00732 5.0kb upstream 5.0kb upstream 5000 false Scaffold25053: 236908-241907 Brassica rapa FPsc
Brara.K00732 5.0kb downstream 5.0kb downstream 11434 true Scaffold25053: 241908-253341 Brassica rapa FPsc
Brara.K00732 5.0kb downstream 5.0kb downstream 5000 false Scaffold25053: 248342-253341 Brassica rapa FPsc
Brara.K00732 10.0kb upstream 10.0kb upstream 16434 true Scaffold25053: 231908-248341 Brassica rapa FPsc
Brara.K00732 10.0kb upstream 10.0kb upstream 10000 false Scaffold25053: 231908-241907 Brassica rapa FPsc
Brara.K00732 10.0kb downstream 10.0kb downstream 16434 true Scaffold25053: 241908-258341 Brassica rapa FPsc
Brara.K00732 10.0kb downstream 10.0kb downstream 10000 false Scaffold25053: 248342-258341 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380198 5261 Brassicaceae View MSA
123840606 5264 Brassicales-Malvales View MSA
124346924 5266 SBM View MSA
124240954 5268 Malvidae View MSA
124070260 5270 Rosid View MSA
123753400 5271 Pentapetalae View MSA
122797245 5272 Eudicot View MSA
122051318 5273 Angiosperm View MSA
121351501 5274 Embryophyte View MSA
123382193 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier